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pangenes/CHANGES.txt
@@ -58,3 +58,5 @@
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15112023: removed bug from 25102023 that impaired removal of non-local genes, this duplicated a few clusters
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23112023: match_cluster.pl now takes a complete pangene results folder ie Oryza_nivara_v1chr1_alltaxa_5neigh_algMmap_
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24112023: added rename_pangenes.pl to assing pangene IDs to previously computed clusters
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+10012024: fixed bug in handling - strand coords in sub query2ref_coords
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+11012024: sub _parseCIGARfeature handles correctly 1bp CS-type SNPs when computing overlap with optional query coord
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