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Merge pull request #6 from benhid/develop
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README.md

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### STRIKE score
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For computing the [STRIKE](http://www.tcoffee.org/Projects/strike/) score,
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the package (v1.2) must be installed on the `usr/local/bin` folder.
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the tool (v1.2) must be installed on the `usr/local/bin` folder.
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e.g. After compiling run:
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*e.g.* After compiling run:
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```bash
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$ sudo cp bin/strike /usr/local/bin
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pyMSA has only two available substitution matrices: *PAM250* and *Blosum62*.
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Other substitution matrices can be used by reading a matrix [file](ftp://ftp.ncbi.nih.gov/blast/matrices/) with `read_matrix_from_file()` (from `pymsa.util.substitution_matrix` module).
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`FileMatrix` implements this method by default:
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Other substitution matrices can be used by reading a matrix [file](ftp://ftp.ncbi.nih.gov/blast/matrices/) with `read_matrix_from_file()` (from the `pymsa.util.substitution_matrix` module). `FileMatrix` implements this method by default:
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```python
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from pymsa.core.substitution_matrix import PAM250, Blosum62, FileMatrix

setup.py

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setup(
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name='pyMSA',
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version='0.5.0',
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version='0.5.1',
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description='Scoring Multiple Sequence Alignments with Python',
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author='Antonio Benítez-Hidalgo, Antonio J. Nebro',
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author_email='antonio.b@uma.es',

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