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1 | 1 | export const ruleMark = {
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| 2 | + "title": "Tonsil ChIP-seq in Th1 cells", |
| 3 | + "subtitle": "Annotated bar chart with lines", |
| 4 | + "style": {"dashed": [3, 3]}, |
| 5 | + "views": [ |
| 6 | + { |
| 7 | + "alignment": "overlay", |
| 8 | + "tracks": [ |
| 9 | + { |
| 10 | + "data": { |
| 11 | + "url": "https://server.gosling-lang.org/api/v1/tileset_info/?d=cistrome-multivec", |
| 12 | + "type": "multivec", |
| 13 | + "row": "sample", |
| 14 | + "column": "position", |
| 15 | + "value": "peak", |
| 16 | + "categories": ["Th1"], |
| 17 | + "binSize": 4 |
| 18 | + }, |
| 19 | + "mark": "bar", |
| 20 | + "x": {"field": "start", "type": "genomic"}, |
| 21 | + "xe": {"field": "end", "type": "genomic"}, |
| 22 | + "y": {"field": "peak", "type": "quantitative", "domain": [0, 0.003]}, |
| 23 | + "color": {"value": "lightgray"} |
| 24 | + }, |
| 25 | + { |
| 26 | + "data": { |
| 27 | + "type": "json", |
| 28 | + "values": [ |
| 29 | + {"c": "chr5", "p": 100000, "v": 0.0004}, |
| 30 | + {"c": "chr10", "p": 100000, "v": 0.0009} |
| 31 | + ], |
| 32 | + "chromosomeField": "c", |
| 33 | + "genomicFields": ["p"] |
| 34 | + }, |
| 35 | + "mark": "rule", |
| 36 | + "x": {"field": "p", "type": "genomic"}, |
| 37 | + "y": {"field": "v", "type": "quantitative", "domain": [0, 0.003]}, |
| 38 | + "strokeWidth": {"field": "v", "type": "quantitative"}, |
| 39 | + "color": {"value": "blue"} |
| 40 | + } |
| 41 | + ], |
| 42 | + "width": 500, |
| 43 | + "height": 200 |
| 44 | + } |
| 45 | + ] |
| 46 | +} |
| 47 | + |
| 48 | +export const ruleMark4 = { |
2 | 49 | "title": "Rule Mark",
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3 | 50 | "subtitle": "Annotate visualization with horizontal and vertical lines",
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4 | 51 | "style": {"dashed": [3, 3]},
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