I would like to ask if the IDH status (mutant or wildtype) of all samples in TCGA-GBM and TCGA-LGG datasets is available. Is it possible to share this table data publicly

[szlthu]

I would like to ask if the IDH status (mutant or wildtype) of all samples in TCGA-GBM and TCGA-LGG datasets is available. Is it possible to share this table data publicly

[Dadatata-JZ]

@szlthu Hi there,

You can retrieve the labels from Cbioportal, e.g., https://www.cbioportal.org/results/download?cancer_study_list=lgg_tcga_pan_can_atlas_2018&tab_index=tab_visualize&case_set_id=lgg_tcga_pan_can_atlas_2018_all&Action=Submit&gene_list=IDH1%250AIDH2

Note, for GBM (in this context, glioblastoma), WHO 2021 has updated the classification.
https://www.cell.com/med/fulltext/S2666-6340(23)00189-7