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genome file (test.fasta) not valid #370

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drxilu opened this issue Mar 29, 2025 · 0 comments
Open

genome file (test.fasta) not valid #370

drxilu opened this issue Mar 29, 2025 · 0 comments

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@drxilu
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drxilu commented Mar 29, 2025

Hi Bakta authors,

I am running commands like:
bakta --db <our_db> test.fasta --output test --force

with test.fasta like:

>contig00001 len=209599 cov=52.3 corr=0 origname=NODE_1_length_209599_cov_52.283904_pilon sw=shovill-spades/1.1.0 date=20241031
TAAGCCCTAGAACGCCGGAAGTAGTTGGGGGTTGCCCCCTGTGAGATAGGGAAGTCGCTT
AGCTTTAGGGAGTTTAGCTCAGCTGGGAGAGCATCTGCCTTACAAGCAGAGGGTCAGCGG
TTCGATCCCGTTAACTCCCAAAGGTCCCGTAGTGTAGCGGTTATCACGTCGCCCTGTCAC
GGCGAAGATCGCGGGTTCGATTCCCGTCGGGACCGTTTAAGATAACGCAAGTTATTTTAG
ACTCGTTAGCTCAGTTGGTAGAGCAATTGACTTTTAATCAATGGGTCACTGGTTCGAGCC
CAGTACGGGTCATATATGCGGGTTTGGCGGAATTGGCAGACGCACCAGATTTAGGATCTG
GCGCTTAACGGCGTGGGGGTTCAAGTCCCTTAACCCGCATTAAGATATAACAAATGAGCC
GGCTTAGCTCAGTTGGTAGAGCATCTGATTTGTAATCAGAGGGTCGCGTGTTCAAGTCAT
GTAGCCGGCATTTTTAGATAGAAGAAAACAGTGCGAACGTAGTTCAGTGGTAGAACACCA
CCTTGCCAAGGTGGGGGTCGCGGGTTCGAATCCCGTCGTTCGCTTAGAGAGGCCGGGGTG

But it returns errors like:
ERROR: genome file (test.fasta) not valid!

Could you please help?

Thank you!

Best, Xi

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