Error: Currently only for plastomes with inverted/directed repeats!

[marcelglueck]

I have used the evaluate_assembly_using_mapping.py script to map original reads to their respective genome produced. However, if isomers have been generated by get_organelle_from_reads.py, I get the message "ERROR: Currently only for plastomes with inverted/directed repeats!" Still, the script produced coverage plots for each of the isomers. I'm now asking myself whether this message is always triggered when isomers are available or whether results of the reads mapping cannot be trusted for isomers that prompted that message. Thanks in advance.