Merge pull request #1469 from NASA-AMMOS/feature/sequence-adaptation-names

Added sequence adaptation names

Author: cohansen

deployment/hasura/metadata/databases/tables/sequencing/sequence_adaptation.yaml

@@ -2,7 +2,7 @@ table:
   name: sequence_adaptation
   schema: sequencing
 configuration:
-    custom_name: "sequence_adaptation"
+  custom_name: "sequence_adaptation"
 select_permissions:
   - role: aerie_admin
     permission:
@@ -22,15 +22,15 @@ select_permissions:
 insert_permissions:
   - role: aerie_admin
     permission:
-      columns: [adaptation]
+      columns: [adaptation, name]
       check: {}
       set:
         owner: "x-hasura-user-id"
         updated_by: "x-hasura-user-id"
 update_permissions:
   - role: aerie_admin
     permission:
-      columns: [adaptation, owner]
+      columns: [adaptation, name, owner]
       filter: {}
       set:
         updated_by: "x-hasura-user-id"

deployment/hasura/migrations/Aerie/5_sequence_adaptation_name/down.sql

@@ -0,0 +1,5 @@
+alter table sequencing.sequence_adaptation
+  drop constraint sequence_adaptation_natural_key,
+  drop column name;
+
+call migrations.mark_migration_rolled_back('5');

deployment/hasura/migrations/Aerie/5_sequence_adaptation_name/up.sql

@@ -0,0 +1,9 @@
+alter table sequencing.sequence_adaptation
+  add column name text not null,
+  add constraint sequence_adaptation_natural_key
+    unique (name);
+
+comment on column sequencing.sequence_adaptation.name is e''
+  'The name of the sequence adaptation.';
+
+call migrations.mark_migration_applied('5');

deployment/postgres-init-db/sql/applied_migrations.sql

@@ -7,3 +7,4 @@ call migrations.mark_migration_applied('1');
 call migrations.mark_migration_applied('2');
 call migrations.mark_migration_applied('3');
 call migrations.mark_migration_applied('4');
+call migrations.mark_migration_applied('5');

deployment/postgres-init-db/sql/tables/sequencing/sequence_adaptation.sql

@@ -1,13 +1,16 @@
 create table sequencing.sequence_adaptation (
   id integer generated always as identity,
   adaptation text not null,
+  name text not null,
   created_at timestamptz not null default now(),
   owner text,
   updated_at timestamptz not null default now(),
   updated_by text,
 
   constraint sequence_adaptation_synthetic_key
     primary key (id),
+  constraint sequence_adaptation_natural_key
+    unique (name),
   foreign key (owner)
     references permissions.users
     on update cascade
@@ -22,6 +25,8 @@ comment on table sequencing.sequence_adaptation is e''
   'A custom adaptation used to overwrite variable and linting rules for the sequence editor';
 comment on column sequencing.sequence_adaptation.adaptation is e''
   'The sequencing adaptation code.';
+comment on column sequencing.sequence_adaptation.name is e''
+  'The name of the sequence adaptation.';
 
 create trigger set_timestamp
 before update on sequencing.sequence_adaptation