mergePrimers.xml

<tool id="mergeprimers" name="MergePrimers" version="0.1.0">
    <requirements>
    <container type="docker">sbc1</container>
   </requirements>
    <description>Merge primers into a single list for ordering.</description>
    <command detect_errors="exit_code"><![CDATA[
        python3 $__tool_directory__/mergePrimers.py -i $input1 
        #for $q in $queries
            -i ${q.input2}
        #end for
        -o $output1 
    ]]></command>
    <inputs>
        <param type="data" name="input1" label="Primer file" format="csv" />
        <repeat name="queries" title="Additional primers">
            <param name="input2" type="data" label="Primer file" format="csv" />
        </repeat>

    </inputs>
    <outputs>
        <data name="output1" format="csv" from_work_dir="out.csv" />
    </outputs>
    <help><![CDATA[
    Merge primers.
        
    - Inputs:
        - Primer files: *csv* file(s) with the list(s) of primers.

    - Outputs:
        - *csv* file with the merged list of primers.
    
.. class:: infomark

Pablo Carbonell, SYNBIOCHEM, University of Manchester, 2020.


    ]]></help>
</tool>