sharedVariables.h

/*  RogueNaRok is an algorithm for the identification of rogue taxa in a set of phylogenetic trees. 
 *
 *  Moreover, the program collection comes with efficient implementations of 
 *   * the unrooted leaf stability by Thorley and Wilkinson
 *   * the taxonomic instability index by Maddinson and Maddison
 *   * a maximum agreement subtree implementation (MAST) for unrooted trees 
 *   * a tool for pruning taxa from a tree collection. 
 * 
 *  Copyright October 2011 by Andre J. Aberer
 * 
 *  Tree I/O and parallel framework are derived from RAxML by Alexandros Stamatakis.
 *
 *  This program is free software; you may redistribute it and/or
 *  modify its under the terms of the GNU General Public License as
 *  published by the Free Software Foundation; either version 2 of the
 *  License, or (at your option) any later version.
 *
 *  This program is distributed in the hope that it will be useful,
 *  but WITHOUT ANY WARRANTY; without even the implied warranty of
 *  MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
 *  General Public License for more details.
 *
 *  For any other inquiries send an Email to Andre J. Aberer
 *  andre.aberer at googlemail.com
 * 
 *  When publishing work that is based on the results from RogueNaRok, please cite:
 *  Andre J. Aberer, Denis Krompaß, Alexandros Stamatakis. RogueNaRok: an Efficient and Exact Algorithm for Rogue Taxon Identification. (unpublished) 2011. 
 * 
 */

#ifdef PARALLEL
volatile int numberOfThreads = 0; 
volatile int numberOfJobs;
volatile int jobCycle;
volatile int threadJob;
volatile char *barrierBuffer;
pthread_mutex_t mutex;
#endif

extern char *infoFileName,
  run_id[128],
  workdir[1024], 
  *programName,
  *programVersion, 
  *programReleaseDate;