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run_make_mat.sh
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#!/bin/bash
set -e
set -o pipefail
python ../tools/make_mat/make_mat.py --histo test_inputs/make_mat_ttr/hh.tgz --target_top test_inputs/make_mat_ttr/topol_md.top --mego_top test_inputs/make_mat_ttr/topol_ref.top --cutoff 0.75 --mode intra+same --out test_inputs/make_mat_ttr/ --tar
diff <(gzip -dc test_inputs/make_mat_ttr/intramat_1_1.ndx.gz) <(gzip -dc test_outputs/make_mat_ttr/intramat_1_1.ndx.gz)
diff <(gzip -dc test_inputs/make_mat_ttr/intermat_1_1.ndx.gz) <(gzip -dc test_outputs/make_mat_ttr/intermat_1_1.ndx.gz)
tar -zxf test_inputs/make_mat_popc/hh.tgz -C test_inputs/make_mat_popc/
python ../tools/make_mat/make_mat.py --histo test_inputs/make_mat_popc/histo --target_top test_inputs/make_mat_popc/topol_md.top --mego_top test_inputs/make_mat_popc/topol_ref.top --cutoff 0.75 --mode intra --out test_inputs/make_mat_popc/
diff <(gzip -dc test_inputs/make_mat_popc/intramat_1_1.ndx.gz) <(gzip -dc test_outputs/make_mat_popc/intramat_1_1.ndx.gz)
tar -zxf test_inputs/make_mat_het_trim/hh.tgz -C test_inputs/make_mat_het_trim/
python ../tools/make_mat/make_mat.py --histo test_inputs/make_mat_het_trim/histo --target_top test_inputs/make_mat_het_trim/topol_mego.top --mego_top test_inputs/make_mat_het_trim/topol.top --cutoff 0.75 --out test_inputs/make_mat_het_trim/
diff <(gzip -dc test_inputs/make_mat_het_trim/intramat_1_1.ndx.gz) <(gzip -dc test_outputs/make_mat_het_trim/intramat_1_1.ndx.gz)
diff <(gzip -dc test_inputs/make_mat_het_trim/intramat_2_2.ndx.gz) <(gzip -dc test_outputs/make_mat_het_trim/intramat_2_2.ndx.gz)
diff <(gzip -dc test_inputs/make_mat_het_trim/intramat_3_3.ndx.gz) <(gzip -dc test_outputs/make_mat_het_trim/intramat_3_3.ndx.gz)
diff <(gzip -dc test_inputs/make_mat_het_trim/intermat_1_2.ndx.gz) <(gzip -dc test_outputs/make_mat_het_trim/intermat_1_2.ndx.gz)
diff <(gzip -dc test_inputs/make_mat_het_trim/intermat_1_3.ndx.gz) <(gzip -dc test_outputs/make_mat_het_trim/intermat_1_3.ndx.gz)
diff <(gzip -dc test_inputs/make_mat_het_trim/intermat_2_3.ndx.gz) <(gzip -dc test_outputs/make_mat_het_trim/intermat_2_3.ndx.gz)