update ci

Author: chengchingwen

.github/dependabot.yml

@@ -0,0 +1,7 @@
+# https://docs.github.com/github/administering-a-repository/configuration-options-for-dependency-updates
+version: 2
+updates:
+  - package-ecosystem: "github-actions"
+    directory: "/" # Location of package manifests
+    schedule:
+      interval: "weekly"

.github/workflows/CompatHelper.yml

@@ -1,26 +1,16 @@
 name: CompatHelper
-
 on:
   schedule:
-    - cron: '00 * * * *'
-  issues:
-    types: [opened, reopened]
-
+    - cron: 0 0 * * *
+  workflow_dispatch:
 jobs:
-  build:
-    runs-on: ${{ matrix.os }}
-    strategy:
-      matrix:
-        julia-version: [1.5.1]
-        julia-arch: [x86]
-        os: [ubuntu-latest]
+  CompatHelper:
+    runs-on: ubuntu-latest
     steps:
-      - uses: julia-actions/setup-julia@latest
-        with:
-          version: ${{ matrix.julia-version }}
       - name: Pkg.add("CompatHelper")
         run: julia -e 'using Pkg; Pkg.add("CompatHelper")'
       - name: CompatHelper.main()
         env:
           GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+          COMPATHELPER_PRIV: ${{ secrets.DOCUMENTER_KEY }}
         run: julia -e 'using CompatHelper; CompatHelper.main()'

.github/workflows/TagBot.yml

@@ -1,9 +1,25 @@
 name: TagBot
 on:
- issue_comment:
+  issue_comment:
     types:
       - created
- workflow_dispatch:
+  workflow_dispatch:
+    inputs:
+      lookback:
+        default: "3"
+permissions:
+  actions: read
+  checks: read
+  contents: write
+  deployments: read
+  issues: read
+  discussions: read
+  packages: read
+  pages: read
+  pull-requests: read
+  repository-projects: read
+  security-events: read
+  statuses: read
 jobs:
   TagBot:
     if: github.event_name == 'workflow_dispatch' || github.actor == 'JuliaTagBot'
@@ -12,3 +28,4 @@ jobs:
       - uses: JuliaRegistries/TagBot@v1
         with:
           token: ${{ secrets.GITHUB_TOKEN }}
+          ssh: ${{ secrets.DOCUMENTER_KEY }}

.github/workflows/ci-pretrain.yml

@@ -1,20 +1,23 @@
 name: CI
-
 on:
   push:
     branches:
       - master
     tags: '*'
   pull_request:
-
-defaults:
-  run:
-    shell: bash
-
+  workflow_dispatch:
+concurrency:
+  # Skip intermediate builds: always.
+  # Cancel intermediate builds: only if it is a pull request build.
+  group: ${{ github.workflow }}-${{ github.ref }}
+  cancel-in-progress: ${{ startsWith(github.ref, 'refs/pull/') }}
 jobs:
   test:
-    name: Julia ${{ matrix.version }} - ${{ matrix.os }} - ${{ matrix.julia-threads }} thread(s) - ${{ github.event_name }} 
+    name: Julia ${{ matrix.version }} - ${{ matrix.os }} - ${{ matrix.julia-threads }} thread(s) - ${{ github.event_name }}
     runs-on: ${{ matrix.os }}
+    permissions: # needed to allow julia-actions/cache to proactively delete old caches that it has created
+      actions: write
+      contents: read
     env:
       JULIA_NUM_THREADS: ${{ matrix.julia-threads }}
       JL_TRF_TEST_TKR: ${{ matrix.test-hgf-tkr }}
@@ -24,6 +27,7 @@ jobs:
       matrix:
         version:
           - '1.10' # Replace this with the minimum Julia version that your package supports.
+          - '1.11'
           # - '1'   # automatically expands to the latest stable 1.x release of Julia
           # - 'nightly'
         os:
@@ -49,38 +53,47 @@ jobs:
             julia-threads: '2'
             test-hgf-tkr: 'true'
     steps:
-      - uses: actions/checkout@v2
-      - uses: julia-actions/setup-julia@v1
+      - uses: actions/checkout@v4
+      - uses: julia-actions/install-juliaup@v2
         with:
-          version: ${{ matrix.version }}
-          arch: ${{ matrix.arch }}
-      - uses: actions/cache@v1
-        env:
-          cache-name: cache-artifacts
-        with:
-          path: ~/.julia/artifacts
-          key: ${{ runner.os }}-test-${{ env.cache-name }}-${{ hashFiles('**/Project.toml') }}
-          restore-keys: |
-            ${{ runner.os }}-test-${{ env.cache-name }}-
-            ${{ runner.os }}-test-
-            ${{ runner.os }}-
-      - run: julia --project -e 'using Pkg; Pkg.instantiate(); Pkg.build(); Pkg.test(; coverage=true)';
+          channel: ${{ matrix.version }}
+      - uses: julia-actions/cache@v2
+      - uses: julia-actions/julia-buildpkg@v1
+      - uses: julia-actions/julia-runtest@v1
       - uses: julia-actions/julia-processcoverage@v1
-      - uses: codecov/codecov-action@v1
+      - uses: codecov/codecov-action@v4
         with:
-          file: lcov.info
-        
+          files: lcov.info
+          token: ${{ secrets.CODECOV_TOKEN }}
+          fail_ci_if_error: false
   docs:
     name: Documentation
     runs-on: ubuntu-latest
+    permissions:
+      actions: write # needed to allow julia-actions/cache to proactively delete old caches that it has created
+      contents: write
+      statuses: write
     steps:
-      - uses: actions/checkout@v2
-      - uses: julia-actions/setup-julia@v1
+      - uses: actions/checkout@v4
+      - uses: julia-actions/setup-julia@v2
         with:
           version: '1'
-      - run: julia --project=docs/ -e 'using Pkg; Pkg.develop(PackageSpec(path=pwd()));
-                                               Pkg.instantiate()'
-      - run: julia --project=docs docs/make.jl
+      - uses: julia-actions/cache@v2
+      - name: Configure doc environment
+        shell: julia --project=docs --color=yes {0}
+        run: |
+          using Pkg
+          Pkg.develop(PackageSpec(path=pwd()))
+          Pkg.instantiate()
+      - uses: julia-actions/julia-buildpkg@v1
+      - uses: julia-actions/julia-docdeploy@v1
         env:
           GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
           DOCUMENTER_KEY: ${{ secrets.DOCUMENTER_KEY }}
+      - name: Run doctests
+        shell: julia --project=docs --color=yes {0}
+        run: |
+          using Documenter: DocMeta, doctest
+          using Transformers
+          DocMeta.setdocmeta!(Transformers, :DocTestSetup, :(using Transformers); recursive=true)
+          doctest(Transformers)