From 7dba95d4f448a444d58adfe0bd6a45d90732b8a6 Mon Sep 17 00:00:00 2001
From: ibwoo <34343649+ibwoo@users.noreply.github.com>
Date: Fri, 16 Jul 2021 15:03:19 +0100
Subject: [PATCH 1/3] Update assess_intron.py

Shebang change to use env command
---
 assess_intron.py | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/assess_intron.py b/assess_intron.py
index 8886947..1790a2f 100644
--- a/assess_intron.py
+++ b/assess_intron.py
@@ -1,4 +1,4 @@
-#!/usr/bin/python
+#!/usr/bin/env python
 
 # call intron retention events using a set of criteria.
 # coded at: Central South University, Changsha 410083, P.R. China

From 807c02ed269393096076ebde014ea0dd3b16ef79 Mon Sep 17 00:00:00 2001
From: ibwoo <34343649+ibwoo@users.noreply.github.com>
Date: Fri, 16 Jul 2021 15:03:53 +0100
Subject: [PATCH 2/3] Update bedscore

---
 bedscore | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/bedscore b/bedscore
index c440974..d741a5d 100644
--- a/bedscore
+++ b/bedscore
@@ -1,4 +1,4 @@
-#!/usr/bin/perl
+#!/usr/bin/env perl
 use strict;
 
 # This script is to index reads and store it in a hash

From 7126ee02e34665c07b18ad72bf77537e1fa4b8ab Mon Sep 17 00:00:00 2001
From: ibwoo <34343649+ibwoo@users.noreply.github.com>
Date: Fri, 16 Jul 2021 15:04:49 +0100
Subject: [PATCH 3/3] Update count_intronic_reads.pl

---
 count_intronic_reads.pl | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/count_intronic_reads.pl b/count_intronic_reads.pl
index fa23391..80cf196 100644
--- a/count_intronic_reads.pl
+++ b/count_intronic_reads.pl
@@ -1,4 +1,4 @@
-#!/usr/bin/perl
+#!/usr/bin/env perl
 # Function:
 # 1. count reads which are truly expressed from intron regions
 # 2. Calculate entropy for each intron