Add JEDI 3DEnVar atmosphere only CI test stub (NOAA-EMC#2309)

Author: RussTreadon-NOAA

ci/cases/pr/C48C48_ufs_hybatmDA.yaml

@@ -0,0 +1,22 @@
+experiment:
+  system: gfs
+  mode: cycled
+
+arguments:
+  pslot: {{ 'pslot' | getenv }}
+  app: ATM
+  resdetatmos: 48
+  resensatmos: 48
+  comroot: {{ 'RUNTESTS' | getenv }}/COMROOT
+  expdir: {{ 'RUNTESTS' | getenv }}/EXPDIR
+  idate: 2021032312
+  edate: 2021032400
+  nens: 2
+  gfs_cyc: 1
+  start: warm
+  yaml: {{ HOMEgfs }}/ci/cases/yamls/ufs_hybatmDA_defaults.ci.yaml
+
+skip_ci_on_hosts:
+  - hera
+  - orion
+  - hercules

ci/cases/yamls/ufs_hybatmDA_defaults.ci.yaml

@@ -0,0 +1,14 @@
+defaults:
+  !INC {{ HOMEgfs }}/parm/config/gfs/yaml/defaults.yaml
+base:
+  DOIAU: "NO"
+  DO_JEDIATMVAR: "YES"
+  DO_JEDIATMENS: "YES"
+  ACCOUNT: {{ 'SLURM_ACCOUNT' | getenv }}
+esfc:
+  DONST: "NO"
+nsst:
+  NST_MODEL: "1"
+sfcanl:
+  DONST: "NO"
+  

parm/config/gfs/config.base.emc.dyn

@@ -397,4 +397,11 @@ export FITSARC="YES"
 export FHMAX_FITS=132
 [[ "${FHMAX_FITS}" -gt "${FHMAX_GFS}" ]] && export FHMAX_FITS=${FHMAX_GFS}
 
+# The monitor jobs are not yet supported for JEDIATMVAR
+if [[ ${DO_JEDIATMVAR} = "YES" ]]; then
+   export DO_VERFOZN="NO"     # Ozone data assimilation monitoring
+   export DO_VERFRAD="NO"     # Radiance data assimilation monitoring
+   export DO_VMINMON="NO"     # GSI minimization monitoring
+fi
+
 echo "END: config.base"

parm/config/gfs/config.esfc

@@ -16,4 +16,9 @@ if [ $DOIAU_ENKF = "YES" ]; then
    export DOSFCANL_ENKF="NO"
 fi
 
+# Turn off NST in JEDIATMENS
+if [[ "${DO_JEDIATMENS}" == "YES" ]]; then
+   export DONST="NO"
+fi
+
 echo "END: config.esfc"

parm/config/gfs/config.nsst

@@ -10,6 +10,11 @@ echo "BEGIN: config.nsst"
 # nstf_name(1) : NST_MODEL (NSST Model) : 0 = OFF, 1 = ON but uncoupled, 2 = ON and coupled
 export NST_MODEL=2
 
+# Set NST_MODEL for JEDIATMVAR or JEDIATMENS
+if [[ "${DO_JEDIATMVAR}" == "YES" || "${DO_JEDIATMENS}" == "YES" ]]; then
+   export NST_MODEL=1
+fi
+
 # nstf_name(2) : NST_SPINUP : 0 = OFF, 1 = ON,
 export NST_SPINUP=0
 cdate="${PDY}${cyc}"

parm/config/gfs/config.resources

@@ -91,7 +91,7 @@ case ${step} in
     ;;
 
   "prepatmiodaobs")
-    export wtime_prepatmiodaobs="00:10:00"
+    export wtime_prepatmiodaobs="00:30:00"
     export npe_prepatmiodaobs=1
     export nth_prepatmiodaobs=1
     export npe_node_prepatmiodaobs=$(( npe_node_max / nth_prepatmiodaobs ))
@@ -196,8 +196,8 @@ case ${step} in
 
   "atmanlinit")
     # make below case dependent later
-    export layout_x=1
-    export layout_y=1
+    export layout_x=8
+    export layout_y=8
 
     export layout_gsib_x=$(( layout_x * 3 ))
     export layout_gsib_y=$(( layout_y * 2 ))
@@ -212,15 +212,16 @@ case ${step} in
 
   "atmanlrun")
     # make below case dependent later
-    export layout_x=1
-    export layout_y=1
+    export layout_x=8
+    export layout_y=8
 
     export wtime_atmanlrun="00:30:00"
     export npe_atmanlrun=$(( layout_x * layout_y * 6 ))
     export npe_atmanlrun_gfs=$(( layout_x * layout_y * 6 ))
     export nth_atmanlrun=1
     export nth_atmanlrun_gfs=${nth_atmanlrun}
     export npe_node_atmanlrun=$(( npe_node_max / nth_atmanlrun ))
+    export memory_atmanlrun="96GB"
     export is_exclusive=True
     ;;
 
@@ -829,8 +830,8 @@ case ${step} in
 
   "atmensanlinit")
     # make below case dependent later
-    export layout_x=1
-    export layout_y=1
+    export layout_x=8
+    export layout_y=8
 
     export wtime_atmensanlinit="00:10:00"
     export npe_atmensanlinit=1
@@ -841,15 +842,16 @@ case ${step} in
 
   "atmensanlrun")
     # make below case dependent later
-    export layout_x=1
-    export layout_y=1
+    export layout_x=8
+    export layout_y=8
 
     export wtime_atmensanlrun="00:30:00"
     export npe_atmensanlrun=$(( layout_x * layout_y * 6 ))
     export npe_atmensanlrun_gfs=$(( layout_x * layout_y * 6 ))
     export nth_atmensanlrun=1
     export nth_atmensanlrun_gfs=${nth_atmensanlrun}
     export npe_node_atmensanlrun=$(( npe_node_max / nth_atmensanlrun ))
+    export memory_atmensanlrun="96GB"
     export is_exclusive=True
     ;;
 

parm/config/gfs/config.sfcanl

@@ -8,4 +8,9 @@ echo "BEGIN: config.sfcanl"
 # Get task specific resources
 . $EXPDIR/config.resources sfcanl
 
+# Turn off NST in JEDIATMVAR
+if [[ "${DO_JEDIATMVAR}" == "YES" ]]; then
+   export DONST="NO"
+fi
+
 echo "END: config.sfcanl"

ush/python/pygfs/task/atm_analysis.py

@@ -94,7 +94,7 @@ def initialize(self: Analysis) -> None:
                     'NMEM_ENS', 'DATA', 'current_cycle', 'ntiles']
             for key in keys:
                 localconf[key] = self.task_config[key]
-            localconf.RUN = 'enkf' + self.task_config.RUN
+            localconf.RUN = 'enkfgdas'
             localconf.dirname = 'ens'
             FileHandler(self.get_fv3ens_dict(localconf)).sync()