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KateFriedman-NOAAKateFriedman-NOAA
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Add MOS jobs to rocoto mesh (NOAA-EMC#2148)
Create separate jobs for GFS MOS - extracted from now-retired vrfy job Refs NOAA-EMC#2068
1 parent bb6151a commit f3f3e05

39 files changed

+910
-1
lines changed

‎env/WCOSS2.env

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@@ -283,4 +283,12 @@ elif [[ "${step}" = "waveawipsbulls" ]]; then
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unset PERL5LIB
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elif [[ "${step:0:3}" = "mos" ]]; then
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export FORT_BUFFERED=TRUE
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if [[ "${step}" = "mos_stn_prep" ]]; then
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export OMP_PROC_BIND=true
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fi
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fi

‎jobs/rocoto/mos_ext_grd_fcst.sh

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#! /usr/bin/env bash
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source "${HOMEgfs}/ush/preamble.sh"
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###############################################################
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# Source FV3GFS workflow modules
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source "${HOMEgfs}/ush/load_fv3gfs_modules.sh"
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status=$?
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(( status != 0 )) && exit "${status}"
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export job="mos_ext_grd_fcst"
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export jobid="${job}.$$"
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###############################################################
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# Source jjob_header before invoking external JJOB
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source "${HOMEgfs}/ush/jjob_header.sh" -e "mos_ext_grd_fcst" -c "base mos_ext_grd_fcst"
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###############################################################
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# Execute the JJOB
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"${HOMEgfs_mos}/jobs/JGFSMOS_EXT_GRD_FORECAST"
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status=$?
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exit "${status}"

‎jobs/rocoto/mos_ext_grd_prdgen.sh

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#! /usr/bin/env bash
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source "${HOMEgfs}/ush/preamble.sh"
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###############################################################
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# Source FV3GFS workflow modules
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source "${HOMEgfs}/ush/load_fv3gfs_modules.sh"
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status=$?
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(( status != 0 )) && exit "${status}"
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export job="mos_ext_grd_prdgen"
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export jobid="${job}.$$"
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###############################################################
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# Source jjob_header before invoking external JJOB
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source "${HOMEgfs}/ush/jjob_header.sh" -e "mos_ext_grd_prdgen" -c "base mos_ext_grd_prdgen"
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###############################################################
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# Execute the JJOB
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"${HOMEgfs_mos}/jobs/JGFSMOS_EXT_GRD_PRDGEN"
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status=$?
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exit "${status}"

‎jobs/rocoto/mos_ext_grd_prep.sh

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#! /usr/bin/env bash
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source "${HOMEgfs}/ush/preamble.sh"
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###############################################################
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# Source FV3GFS workflow modules
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source "${HOMEgfs}/ush/load_fv3gfs_modules.sh"
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status=$?
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(( status != 0 )) && exit "${status}"
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export job="mos_ext_grd_prep"
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export jobid="${job}.$$"
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###############################################################
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# Source jjob_header before invoking external JJOB
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source "${HOMEgfs}/ush/jjob_header.sh" -e "mos_ext_grd_prep" -c "base mos_ext_grd_prep"
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###############################################################
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# Execute the JJOB
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"${HOMEgfs_mos}/jobs/JGFSMOS_EXT_GRD_PREP"
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status=$?
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exit "${status}"

‎jobs/rocoto/mos_ext_stn_fcst.sh

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#! /usr/bin/env bash
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source "${HOMEgfs}/ush/preamble.sh"
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###############################################################
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# Source FV3GFS workflow modules
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source "${HOMEgfs}/ush/load_fv3gfs_modules.sh"
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status=$?
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(( status != 0 )) && exit "${status}"
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export job="mos_ext_stn_fcst"
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export jobid="${job}.$$"
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###############################################################
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# Source jjob_header before invoking external JJOB
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source "${HOMEgfs}/ush/jjob_header.sh" -e "mos_ext_stn_fcst" -c "base mos_ext_stn_fcst"
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###############################################################
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# Execute the JJOB
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"${HOMEgfs_mos}/jobs/JGFSMOS_EXT_STN_FORECAST"
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status=$?
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exit "${status}"

‎jobs/rocoto/mos_ext_stn_prdgen.sh

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@@ -0,0 +1,25 @@
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#! /usr/bin/env bash
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source "${HOMEgfs}/ush/preamble.sh"
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###############################################################
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# Source FV3GFS workflow modules
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source "${HOMEgfs}/ush/load_fv3gfs_modules.sh"
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status=$?
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(( status != 0 )) && exit "${status}"
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export job="mos_ext_stn_prdgen"
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export jobid="${job}.$$"
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###############################################################
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# Source jjob_header before invoking external JJOB
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source "${HOMEgfs}/ush/jjob_header.sh" -e "mos_ext_stn_prdgen" -c "base mos_ext_stn_prdgen"
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###############################################################
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# Execute the JJOB
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"${HOMEgfs_mos}/jobs/JGFSMOS_EXT_STN_PRDGEN"
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status=$?
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exit "${status}"

‎jobs/rocoto/mos_ext_stn_prep.sh

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#! /usr/bin/env bash
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source "${HOMEgfs}/ush/preamble.sh"
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###############################################################
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# Source FV3GFS workflow modules
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source "${HOMEgfs}/ush/load_fv3gfs_modules.sh"
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status=$?
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(( status != 0 )) && exit "${status}"
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export job="mos_ext_stn_prep"
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export jobid="${job}.$$"
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###############################################################
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# Source jjob_header before invoking external JJOB
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source "${HOMEgfs}/ush/jjob_header.sh" -e "mos_ext_stn_prep" -c "base mos_ext_stn_prep"
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###############################################################
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# Execute the JJOB
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"${HOMEgfs_mos}/jobs/JGFSMOS_EXT_STN_PREP"
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status=$?
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exit "${status}"

‎jobs/rocoto/mos_grd_fcst.sh

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@@ -0,0 +1,25 @@
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#! /usr/bin/env bash
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source "${HOMEgfs}/ush/preamble.sh"
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###############################################################
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# Source FV3GFS workflow modules
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source "${HOMEgfs}/ush/load_fv3gfs_modules.sh"
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status=$?
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(( status != 0 )) && exit "${status}"
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export job="mos_grd_fcst"
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export jobid="${job}.$$"
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###############################################################
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# Source jjob_header before invoking external JJOB
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source "${HOMEgfs}/ush/jjob_header.sh" -e "mos_grd_fcst" -c "base mos_grd_fcst"
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###############################################################
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# Execute the JJOB
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"${HOMEgfs_mos}/jobs/JGFSMOS_GRD_FORECAST"
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status=$?
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exit "${status}"

‎jobs/rocoto/mos_grd_prdgen.sh

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@@ -0,0 +1,25 @@
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#! /usr/bin/env bash
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source "${HOMEgfs}/ush/preamble.sh"
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###############################################################
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# Source FV3GFS workflow modules
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source "${HOMEgfs}/ush/load_fv3gfs_modules.sh"
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status=$?
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(( status != 0 )) && exit "${status}"
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export job="mos_grd_prdgen"
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export jobid="${job}.$$"
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###############################################################
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# Source jjob_header before invoking external JJOB
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source "${HOMEgfs}/ush/jjob_header.sh" -e "mos_grd_prdgen" -c "base mos_grd_prdgen"
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###############################################################
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# Execute the JJOB
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"${HOMEgfs_mos}/jobs/JGFSMOS_GRD_PRDGEN"
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status=$?
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exit "${status}"

‎jobs/rocoto/mos_grd_prep.sh

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#! /usr/bin/env bash
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source "${HOMEgfs}/ush/preamble.sh"
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###############################################################
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# Source FV3GFS workflow modules
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source "${HOMEgfs}/ush/load_fv3gfs_modules.sh"
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status=$?
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(( status != 0 )) && exit "${status}"
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export job="mos_grd_prep"
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export jobid="${job}.$$"
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###############################################################
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# Source jjob_header before invoking external JJOB
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source "${HOMEgfs}/ush/jjob_header.sh" -e "mos_grd_prep" -c "base mos_grd_prep"
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###############################################################
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# Execute the JJOB
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"${HOMEgfs_mos}/jobs/JGFSMOS_GRD_PREP"
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status=$?
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exit "${status}"

‎jobs/rocoto/mos_stn_fcst.sh

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#! /usr/bin/env bash
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source "${HOMEgfs}/ush/preamble.sh"
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###############################################################
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# Source FV3GFS workflow modules
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source "${HOMEgfs}/ush/load_fv3gfs_modules.sh"
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status=$?
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(( status != 0 )) && exit "${status}"
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export job="mos_stn_fcst"
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export jobid="${job}.$$"
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###############################################################
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# Source jjob_header before invoking external JJOB
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source "${HOMEgfs}/ush/jjob_header.sh" -e "mos_stn_fcst" -c "base mos_stn_fcst"
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###############################################################
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# Execute the JJOB
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"${HOMEgfs_mos}/jobs/JGFSMOS_STN_FORECAST"
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status=$?
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exit "${status}"

‎jobs/rocoto/mos_stn_prdgen.sh

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#! /usr/bin/env bash
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source "${HOMEgfs}/ush/preamble.sh"
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###############################################################
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# Source FV3GFS workflow modules
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source "${HOMEgfs}/ush/load_fv3gfs_modules.sh"
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status=$?
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(( status != 0 )) && exit "${status}"
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export job="mos_stn_prdgen"
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export jobid="${job}.$$"
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###############################################################
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# Source jjob_header before invoking external JJOB
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source "${HOMEgfs}/ush/jjob_header.sh" -e "mos_stn_prdgen" -c "base mos_stn_prdgen"
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###############################################################
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# Execute the JJOB
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"${HOMEgfs_mos}/jobs/JGFSMOS_STN_PRDGEN"
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status=$?
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exit "${status}"

‎jobs/rocoto/mos_stn_prep.sh

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#! /usr/bin/env bash
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source "${HOMEgfs}/ush/preamble.sh"
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###############################################################
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# Source FV3GFS workflow modules
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source "${HOMEgfs}/ush/load_fv3gfs_modules.sh"
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status=$?
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(( status != 0 )) && exit "${status}"
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export job="mos_stn_prep"
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export jobid="${job}.$$"
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###############################################################
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# Source jjob_header before invoking external JJOB
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source "${HOMEgfs}/ush/jjob_header.sh" -e "mos_stn_prep" -c "base mos_stn_prep"
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###############################################################
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# Execute the JJOB
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"${HOMEgfs_mos}/jobs/JGFSMOS_STN_PREP"
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status=$?
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exit "${status}"

‎jobs/rocoto/mos_wx_ext_prdgen.sh

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#! /usr/bin/env bash
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source "${HOMEgfs}/ush/preamble.sh"
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###############################################################
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# Source FV3GFS workflow modules
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source "${HOMEgfs}/ush/load_fv3gfs_modules.sh"
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status=$?
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(( status != 0 )) && exit "${status}"
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export job="mos_wx_ext_prdgen"
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export jobid="${job}.$$"
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###############################################################
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# Source jjob_header before invoking external JJOB
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source "${HOMEgfs}/ush/jjob_header.sh" -e "mos_wx_ext_prdgen" -c "base mos_wx_ext_prdgen"
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###############################################################
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# Execute the JJOB
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"${HOMEgfs_mos}/jobs/JGFSMOS_WX_EXT_PRDGEN"
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status=$?
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exit "${status}"

‎jobs/rocoto/mos_wx_prdgen.sh

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#! /usr/bin/env bash
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source "${HOMEgfs}/ush/preamble.sh"
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###############################################################
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# Source FV3GFS workflow modules
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source "${HOMEgfs}/ush/load_fv3gfs_modules.sh"
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status=$?
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(( status != 0 )) && exit "${status}"
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export job="mos_wx_prdgen"
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export jobid="${job}.$$"
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###############################################################
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# Source jjob_header before invoking external JJOB
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source "${HOMEgfs}/ush/jjob_header.sh" -e "mos_wx_prdgen" -c "base mos_wx_prdgen"
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###############################################################
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# Execute the JJOB
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"${HOMEgfs_mos}/jobs/JGFSMOS_WX_PRDGEN"
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status=$?
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exit "${status}"

‎modulefiles/module_base.wcoss2.lua

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@@ -38,4 +38,7 @@ load(pathJoin("prepobs", os.getenv("prepobs_run_ver")))
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prepend_path("MODULEPATH", pathJoin("/lfs/h2/emc/global/save/emc.global/git/Fit2Obs/v" .. os.getenv("fit2obs_ver"), "modulefiles"))
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load(pathJoin("fit2obs", os.getenv("fit2obs_ver")))
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append_path("MODULEPATH", pathJoin("/apps/ops/prod/nco/models/modulefiles"))
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load(pathJoin("mos_shared", os.getenv("mos_shared_ver")))
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whatis("Description: GFS run environment")

‎parm/config/gfs/config.base.emc.dyn

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@@ -64,6 +64,7 @@ export DO_GENESIS_FSU="NO" # Cyclone genesis verification (FSU)
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export DO_VERFOZN="YES" # Ozone data assimilation monitoring
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export DO_VERFRAD="YES" # Radiance data assimilation monitoring
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export DO_VMINMON="YES" # GSI minimization monitoring
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export DO_MOS="NO" # GFS Model Output Statistics - Only supported on WCOSS2
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# NO for retrospective parallel; YES for real-time parallel
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# arch.sh uses REALTIME for MOS. Need to set REALTIME=YES

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