mkdocs.yml

site_name: LFADS Run Manager
site_description: Documentation of LFADS Run Manager for Matlab
site_author: Daniel J. O'Shea

repo_name: 'lfads/lfads-run-manager'
repo_url: 'https://github.com/lfads/lfads-run-manager'

strict: true

theme:
  name: material
  custom_dir: docs/theme/
  feature:
    tabs: true
  palette:
    primary: 'red'
    accent: 'red'

extra:
  social:
    - type: 'github'
      link: 'https://github.com/lfads'
    - type: 'twitter'
      link: 'https://twitter.com/djoshea'

markdown_extensions:
  - admonition
  - codehilite
  - markdown.extensions.def_list
  - pymdownx.inlinehilite
  - pymdownx.superfences
  - smarty
  - toc:
      permalink: true

nav:
  - LFADS Run Manager:
    - Overview: index.md
    - Installation: install.md
    - Matlab Classes and Packages: matlab.md
    - Key Concepts: concepts.md
    - Interfacing with your Datasets : interfacing.md
  - Training LFADS:
    - Setting up a single-session run: single-session.md
    - Running LFADS: running.md
    - Hyperparameters: hyperparameters.md
    - Multisession Stitched Models: multisession.md
  - Analyzing LFADS:
    - Analyzing LFADS Posterior Means: analysis.md
    - Loading the Model Trained Parameters: trained-params.md
  - More details:
    - File Organization: files.md


copyright: 'Copyright &copy; 2017 &mdash; <a href="http://djoshea.com">Daniel J. O&#39;Shea</a>'