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InformaticsMetricTriNetX.sql
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SELECT 'CREATING TEMP VIEWS' as log_entry;
\o /dev/null
-- view for patients with a fact in past year
CREATE OR REPLACE LOCAL TEMP VIEW ALL_DOMAIN_1YR AS
SELECT distinct patient_id FROM :TNX_SCHEMA.diagnosis WHERE YEAR(date) = (YEAR(CURRENT_DATE())-1) AND orphan = FALSE
UNION
SELECT distinct patient_id FROM :TNX_SCHEMA.genomic WHERE YEAR(test_date) = (YEAR(CURRENT_DATE())-1) AND orphan = FALSE
UNION
SELECT distinct patient_id FROM :TNX_SCHEMA.procedure WHERE YEAR(date) = (YEAR(CURRENT_DATE())-1) AND orphan = FALSE
UNION
SELECT distinct patient_id FROM :TNX_SCHEMA.lab_result WHERE YEAR(test_date) = (YEAR(CURRENT_DATE())-1) AND orphan = FALSE
UNION
SELECT distinct patient_id FROM :TNX_SCHEMA.medication WHERE YEAR(start_date) = (YEAR(CURRENT_DATE())-1) AND orphan = FALSE
UNION
SELECT distinct patient_id FROM :TNX_SCHEMA.oncology WHERE YEAR(observation_date) = (YEAR(CURRENT_DATE())-1) AND orphan = FALSE
UNION
SELECT distinct patient_id FROM :TNX_SCHEMA.tumor_properties WHERE YEAR(observation_date) = (YEAR(CURRENT_DATE())-1) AND orphan = FALSE
UNION
SELECT distinct patient_id FROM :TNX_SCHEMA.vital_signs WHERE YEAR(measure_date) = (YEAR(CURRENT_DATE())-1) AND orphan = FALSE ;
-- view for patients with a fact in past five years
CREATE OR REPLACE LOCAL TEMP VIEW ALL_DOMAIN_5YR AS
SELECT distinct patient_id FROM :TNX_SCHEMA.diagnosis WHERE YEAR(date) >= (YEAR(CURRENT_DATE())-5) AND YEAR(date) < YEAR(CURRENT_DATE()) AND orphan = FALSE
UNION
SELECT distinct patient_id FROM :TNX_SCHEMA.genomic WHERE YEAR(test_date) >= (YEAR(CURRENT_DATE())-5) AND YEAR(test_date) < YEAR(CURRENT_DATE()) AND orphan = FALSE
UNION
SELECT distinct patient_id FROM :TNX_SCHEMA.procedure WHERE YEAR(date) >= (YEAR(CURRENT_DATE())-5) AND YEAR(date) < YEAR(CURRENT_DATE()) AND orphan = FALSE
UNION
SELECT distinct patient_id FROM :TNX_SCHEMA.lab_result WHERE YEAR(test_date)>= (YEAR(CURRENT_DATE())-5) AND YEAR(test_date) < YEAR(CURRENT_DATE()) AND orphan = FALSE
UNION
SELECT distinct patient_id FROM :TNX_SCHEMA.medication WHERE YEAR(start_date) >= (YEAR(CURRENT_DATE())-5) AND YEAR(start_date) < YEAR(CURRENT_DATE()) AND orphan = FALSE
UNION
SELECT distinct patient_id FROM :TNX_SCHEMA.oncology WHERE YEAR(observation_date) >= (YEAR(CURRENT_DATE())-5) AND YEAR(observation_date) < YEAR(CURRENT_DATE()) AND orphan = FALSE
UNION
SELECT distinct patient_id FROM :TNX_SCHEMA.tumor_properties WHERE YEAR(observation_date) >= (YEAR(CURRENT_DATE())-5) AND YEAR(observation_date) < YEAR(CURRENT_DATE()) AND orphan = FALSE
UNION
SELECT distinct patient_id FROM :TNX_SCHEMA.vital_signs WHERE YEAR(measure_date) >= (YEAR(CURRENT_DATE())-5) AND YEAR(measure_date) < YEAR(CURRENT_DATE()) AND orphan = FALSE ;
-- view for patients with a fact in past year, including date of fact to calculate "age at event"
CREATE OR REPLACE LOCAL TEMP VIEW DATE_ALL_DOMAIN_1YR AS
SELECT distinct patient_id, date FROM :TNX_SCHEMA.diagnosis WHERE YEAR(date) = (YEAR(CURRENT_DATE())-1) AND orphan = FALSE
UNION
SELECT distinct patient_id, test_date as date FROM :TNX_SCHEMA.genomic WHERE YEAR(test_date) = (YEAR(CURRENT_DATE())-1) AND orphan = FALSE
UNION
SELECT distinct patient_id, date FROM :TNX_SCHEMA.procedure WHERE YEAR(date) = (YEAR(CURRENT_DATE())-1) AND orphan = FALSE
UNION
SELECT distinct patient_id, test_date AS date FROM :TNX_SCHEMA.lab_result WHERE YEAR(test_date) = (YEAR(CURRENT_DATE())-1) AND orphan = FALSE
UNION
SELECT distinct patient_id, start_date AS date FROM :TNX_SCHEMA.medication WHERE YEAR(start_date) = (YEAR(CURRENT_DATE())-1) AND orphan = FALSE
UNION
SELECT distinct patient_id, observation_date AS date FROM :TNX_SCHEMA.oncology WHERE YEAR(observation_date) = (YEAR(CURRENT_DATE())-1) AND orphan = FALSE
UNION
SELECT distinct patient_id, observation_date AS date FROM :TNX_SCHEMA.tumor_properties WHERE YEAR(observation_date) = (YEAR(CURRENT_DATE())-1) AND orphan = FALSE
UNION
SELECT distinct patient_id, measure_date AS date FROM :TNX_SCHEMA.vital_signs WHERE YEAR(measure_date) = (YEAR(CURRENT_DATE())-1) AND orphan = FALSE ;
-- view for patients with a fact in past five years, including date of fact to calculate "age at event"
CREATE OR REPLACE LOCAL TEMP VIEW DATE_ALL_DOMAIN_5YR AS
SELECT distinct patient_id, date FROM :TNX_SCHEMA.diagnosis WHERE YEAR(date) >= (YEAR(CURRENT_DATE())-5) AND YEAR(date) < YEAR(CURRENT_DATE()) AND orphan = FALSE
UNION
SELECT distinct patient_id, test_date AS date FROM :TNX_SCHEMA.genomic WHERE YEAR(test_date) >= (YEAR(CURRENT_DATE())-5) AND YEAR(test_date) < YEAR(CURRENT_DATE()) AND orphan = FALSE
UNION
SELECT distinct patient_id, date FROM :TNX_SCHEMA.procedure WHERE YEAR(date) >= (YEAR(CURRENT_DATE())-5) AND YEAR(date) < YEAR(CURRENT_DATE()) AND orphan = FALSE
UNION
SELECT distinct patient_id, test_date AS date FROM :TNX_SCHEMA.lab_result WHERE YEAR(test_date)>= (YEAR(CURRENT_DATE())-5) AND YEAR(test_date) < YEAR(CURRENT_DATE()) AND orphan = FALSE
UNION
SELECT distinct patient_id, start_date AS date FROM :TNX_SCHEMA.medication WHERE YEAR(start_date) >= (YEAR(CURRENT_DATE())-5) AND YEAR(start_date) < YEAR(CURRENT_DATE()) AND orphan = FALSE
UNION
SELECT distinct patient_id, observation_date AS date FROM :TNX_SCHEMA.oncology WHERE YEAR(observation_date) >= (YEAR(CURRENT_DATE())-5) AND YEAR(observation_date) < YEAR(CURRENT_DATE()) AND orphan = FALSE
UNION
SELECT distinct patient_id, observation_date AS date FROM :TNX_SCHEMA.tumor_properties WHERE YEAR(observation_date) >= (YEAR(CURRENT_DATE())-5) AND YEAR(observation_date) < YEAR(CURRENT_DATE()) AND orphan = FALSE
UNION
SELECT distinct patient_id, measure_date AS date FROM :TNX_SCHEMA.vital_signs WHERE YEAR(measure_date) >= (YEAR(CURRENT_DATE())-5) AND YEAR(measure_date) < YEAR(CURRENT_DATE()) AND orphan = FALSE ;
-- view for encounters in past year
CREATE OR REPLACE LOCAL TEMP VIEW ENCOUNTER_1YR AS
SELECT distinct encounter_id
FROM :TNX_SCHEMA.encounter
WHERE YEAR(start_date) = (YEAR(CURRENT_DATE())-1)
AND orphan = FALSE
;
-- view for encounters in past five years
CREATE OR REPLACE LOCAL TEMP VIEW ENCOUNTER_5YR AS
SELECT distinct encounter_id
FROM :TNX_SCHEMA.encounter
WHERE YEAR(start_date) >= (YEAR(CURRENT_DATE())-5) AND YEAR(start_date) < YEAR(CURRENT_DATE())
AND orphan = FALSE
;
-- view for patients with NLP docs
CREATE OR REPLACE LOCAL TEMP VIEW NLP_PATIENTS AS
SELECT distinct patient_id, encounter_id FROM :TNX_SCHEMA.diagnosis WHERE source_type = 'NLP'
UNION
SELECT distinct patient_id, encounter_id FROM :TNX_SCHEMA.medication WHERE source_type = 'NLP'
UNION
SELECT distinct patient_id, encounter_id FROM :TNX_SCHEMA.lab_result WHERE source_type = 'NLP'
UNION
SELECT distinct patient_id, encounter_id FROM :TNX_SCHEMA.vital_signs WHERE source_type = 'NLP'
UNION
SELECT distinct patient_id, 'N/A' FROM :TNX_SCHEMA.oncology WHERE source_type = 'NLP'
UNION
SELECT distinct patient_id, 'N/A' FROM :TNX_SCHEMA.tumor_properties WHERE source_type = 'NLP';
---------------------------------------------------------------------------------------------------------
-- 1. Re-create output table
---------------------------------------------------------------------------------------------------------
\o
SELECT 'CREATE TEMP CTSA OUTPUT TABLE' as log_entry;
\o /dev/null
DROP TABLE IF EXISTS :TNX_SCHEMA.ctsa;
CREATE TEMPORARY TABLE :TNX_SCHEMA.ctsa (
variable_name VARCHAR(50),
one_year INT,
five_year INT
);
INSERT INTO :TNX_SCHEMA.ctsa
(
SELECT 'data_model', 3, 3
);
---------------------------------------------------------------------------------------------------------
-- 2. Denominators
---------------------------------------------------------------------------------------------------------
\o
SELECT 'INSERTING DENOMINATORS' as log_entry;
\o /dev/null
-- total encounters
INSERT INTO :TNX_SCHEMA.ctsa
(
SELECT 'total_encounters',
(
SELECT count(distinct encounter_id)
FROM ENCOUNTER_1YR
),
(
SELECT count(distinct encounter_id)
FROM ENCOUNTER_5YR
)
);
-- total patients
INSERT INTO :TNX_SCHEMA.ctsa
(
SELECT 'total_patients',
(
SELECT count(distinct patient_id)
FROM ALL_DOMAIN_1YR
),
(
SELECT count(distinct patient_id)
FROM ALL_DOMAIN_5YR
)
);
-- total patients over 12
INSERT INTO :TNX_SCHEMA.ctsa
(
SELECT 'total_pt_gt_12',
(
SELECT count(distinct pt.patient_id)
FROM DATE_ALL_DOMAIN_1YR pt
JOIN :TNX_SCHEMA.patient p ON pt.patient_id = p.patient_id
WHERE AGE_IN_YEARS(pt.date, p.birth_date) > 12
),
(
SELECT count(distinct pt.patient_id)
FROM DATE_ALL_DOMAIN_5YR pt
JOIN :TNX_SCHEMA.patient p ON pt.patient_id = p.patient_id
WHERE AGE_IN_YEARS(pt.date, p.birth_date) > 12
)
);
---------------------------------------------------------------------------------------------------------
-- 3. Age Domain
---------------------------------------------------------------------------------------------------------
\o
SELECT 'AGE DOMAIN' as log_entry;
\o /dev/null
-- unique patients with age
INSERT INTO :TNX_SCHEMA.ctsa
(
SELECT 'uniq_pt_with_age',
(
SELECT count(distinct pt.patient_id)
FROM ALL_DOMAIN_1YR pt
JOIN :TNX_SCHEMA.patient p ON pt.patient_id = p.patient_id
WHERE p.birth_date IS NOT NULL
),
(
SELECT count(distinct pt.patient_id)
FROM ALL_DOMAIN_5YR pt
JOIN :TNX_SCHEMA.patient p ON pt.patient_id = p.patient_id
WHERE p.birth_date IS NOT NULL
)
);
-- unique patients with DOB in future
INSERT INTO :TNX_SCHEMA.ctsa
(
SELECT 'uniq_pt_birthdate_in_future',
(
SELECT count(distinct pt.patient_id)
FROM ALL_DOMAIN_1YR pt
JOIN :TNX_SCHEMA.patient p ON pt.patient_id = p.patient_id
WHERE YEAR(p.birth_date) >= YEAR(CURRENT_DATE()) +1
),
(
SELECT count(distinct pt.patient_id)
FROM ALL_DOMAIN_5YR pt
JOIN :TNX_SCHEMA.patient p ON pt.patient_id = p.patient_id
WHERE YEAR(p.birth_date) >= YEAR(CURRENT_DATE()) +1
)
);
-- unique patients over 120
INSERT INTO :TNX_SCHEMA.ctsa
(
SELECT 'uniq_pt_age_over_120',
(
SELECT count(distinct pt.patient_id)
FROM ALL_DOMAIN_1YR pt
JOIN :TNX_SCHEMA.patient p ON pt.patient_id = p.patient_id
WHERE (p.death_date IS NULL AND AGE_IN_YEARS(TO_DATE('12-31-' || (YEAR(CURRENT_DATE())-1), 'MM-DD-YYYY'), p.birth_date) > 120)
OR (AGE_IN_YEARS(p.birth_date, p.death_date) > 120)
),
(
SELECT count(distinct pt.patient_id)
FROM ALL_DOMAIN_5YR pt
JOIN :TNX_SCHEMA.patient p ON pt.patient_id = p.patient_id
WHERE (p.death_date IS NULL AND AGE_IN_YEARS(TO_DATE('12-31-' || (YEAR(CURRENT_DATE())-1), 'MM-DD-YYYY'), p.birth_date) > 120)
OR (AGE_IN_YEARS(p.birth_date, p.death_date) > 120)
)
);
---------------------------------------------------------------------------------------------------------
-- 4. Gender Domain
---------------------------------------------------------------------------------------------------------
\o
SELECT 'GENDER DOMAIN' as log_entry;
\o /dev/null
-- unique patients with administrative gender (excludes null, unknown, not specified)
INSERT INTO :TNX_SCHEMA.ctsa
(
SELECT 'uniq_pt_with_gender',
(
SELECT count(distinct pt.patient_id)
FROM ALL_DOMAIN_1YR pt
JOIN :TNX_SCHEMA.patient p ON pt.patient_id = p.patient_id
JOIN :TNX_SCHEMA.mapping ON 'DEM|GENDER:' || p.gender = mapping.provider_code
WHERE mapping.mt_code IN ('UMLS:HL7V3.0:Gender:F','UMLS:HL7V3.0:Gender:M')
),
(
SELECT count(distinct pt.patient_id)
FROM ALL_DOMAIN_5YR pt
JOIN :TNX_SCHEMA.patient p ON pt.patient_id = p.patient_id
JOIN :TNX_SCHEMA.mapping ON 'DEM|GENDER:' || p.gender = mapping.provider_code
WHERE mapping.mt_code IN ('UMLS:HL7V3.0:Gender:F','UMLS:HL7V3.0:Gender:M')
)
);
---------------------------------------------------------------------------------------------------------
-- 4. Lab Test/LOINC Domain
---------------------------------------------------------------------------------------------------------
\o
SELECT 'LAB DOMAIN' as log_entry;
\o /dev/null
-- unique patients with lab tested coded in LOINC in timeframe
INSERT INTO :TNX_SCHEMA.ctsa
(
SELECT 'uniq_pt_loinc',
(
SELECT count(distinct lr.patient_id)
FROM :TNX_SCHEMA.lab_result lr
JOIN :TNX_SCHEMA.mapping ON lr.observation_code_system || ':' || lr.observation_code = mapping.provider_code
WHERE mapping.mt_code like 'UMLS:LNC:%'
AND YEAR(test_date) = (YEAR(CURRENT_DATE())-1)
AND lr.orphan = FALSE
),
(
SELECT count(distinct lr.patient_id)
FROM :TNX_SCHEMA.lab_result lr
JOIN :TNX_SCHEMA.mapping ON lr.observation_code_system || ':' || lr.observation_code = mapping.provider_code
WHERE mapping.mt_code like 'UMLS:LNC:%'
AND YEAR(test_date)>= (YEAR(CURRENT_DATE())-5) AND YEAR(test_date) < YEAR(CURRENT_DATE())
AND lr.orphan = FALSE
)
);
-- unique encounters with at least one lab test coded in LOINC in timeframe
INSERT INTO :TNX_SCHEMA.ctsa
(
SELECT 'uniq_enc_loinc',
(
SELECT count(distinct enc.encounter_id)
FROM ENCOUNTER_1YR enc
JOIN :TNX_SCHEMA.lab_result lr ON enc.encounter_id = lr.encounter_id
JOIN :TNX_SCHEMA.mapping ON lr.observation_code_system || ':' || lr.observation_code = mapping.provider_code
WHERE mapping.mt_code like 'UMLS:LNC:%'
AND lr.orphan = FALSE
),
(
SELECT count(distinct enc.encounter_id)
FROM ENCOUNTER_5YR enc
JOIN :TNX_SCHEMA.lab_result lr ON enc.encounter_id = lr.encounter_id
JOIN :TNX_SCHEMA.mapping ON lr.observation_code_system || ':' || lr.observation_code = mapping.provider_code
WHERE mapping.mt_code like 'UMLS:LNC:%'
AND lr.orphan = FALSE
)
);
---------------------------------------------------------------------------------------------------------
-- 5. Medication/RXNORM Domain
---------------------------------------------------------------------------------------------------------
\o
SELECT 'MED DOMAIN' as log_entry;
\o /dev/null
-- unique patients with RxNorm/NDC code in timeframe
INSERT INTO :TNX_SCHEMA.ctsa
(
SELECT 'uniq_pt_med_rxnorm',
(
SELECT count(distinct med.patient_id)
FROM :TNX_SCHEMA.medication med
JOIN :TNX_SCHEMA.mapping ON med.code_system || ':' || med.code = mapping.provider_code
WHERE (mapping.mt_code like 'NLM:RXNORM:%' OR mapping.mt_code like 'RxDrug:%' OR mapping.mt_code like 'NDC:%')
AND YEAR(start_date) = (YEAR(CURRENT_DATE())-1)
AND med.orphan = FALSE
),
(
SELECT count(distinct med.patient_id)
FROM :TNX_SCHEMA.medication med
JOIN :TNX_SCHEMA.mapping ON med.code_system || ':' || med.code = mapping.provider_code
WHERE (mapping.mt_code like 'NLM:RXNORM:%' OR mapping.mt_code like 'RxDrug:%' OR mapping.mt_code like 'NDC:%')
AND YEAR(start_date) >= (YEAR(CURRENT_DATE())-5) AND YEAR(start_date) < YEAR(CURRENT_DATE())
AND med.orphan = FALSE
)
);
-- unique encounters with at least one RxNorm/NDC code in timeframe
INSERT INTO :TNX_SCHEMA.ctsa
(
SELECT 'uniq_enc_med_rxnorm',
(
SELECT count(distinct enc.encounter_id)
FROM ENCOUNTER_1YR enc
JOIN :TNX_SCHEMA.medication med ON enc.encounter_id = med.encounter_id
JOIN :TNX_SCHEMA.mapping ON med.code_system || ':' || med.code = mapping.provider_code
WHERE (mapping.mt_code like 'NLM:RXNORM:%' OR mapping.mt_code like 'RxDrug:%' OR mapping.mt_code like 'NDC:%')
AND med.orphan = FALSE
),
(
SELECT count(distinct enc.encounter_id)
FROM ENCOUNTER_5YR enc
JOIN :TNX_SCHEMA.medication med ON enc.encounter_id = med.encounter_id
JOIN :TNX_SCHEMA.mapping ON med.code_system || ':' || med.code = mapping.provider_code
WHERE (mapping.mt_code like 'NLM:RXNORM:%' OR mapping.mt_code like 'RxDrug:%' OR mapping.mt_code like 'NDC:%')
AND med.orphan = FALSE
)
);
---------------------------------------------------------------------------------------------------------
-- 6. ICD9/10 Diagnosis Domain
---------------------------------------------------------------------------------------------------------
\o
SELECT 'ICD9/10 DIAG DOMAIN' as log_entry;
\o /dev/null
-- unique patients with an ICD9/10 diagnosis in timeframe
INSERT INTO :TNX_SCHEMA.ctsa
(
SELECT 'uniq_pt_icd_dx',
(
SELECT count(distinct diag.patient_id)
FROM :TNX_SCHEMA.diagnosis diag
JOIN :TNX_SCHEMA.mapping ON diag.code_system || ':' || diag.code = mapping.provider_code
WHERE (mapping.mt_code like 'UMLS:ICD10CM:%' OR mapping.mt_code like 'UMLS:ICD9CM:%')
AND YEAR(date) = (YEAR(CURRENT_DATE())-1)
AND diag.orphan = FALSE
),
(
SELECT count(distinct diag.patient_id)
FROM :TNX_SCHEMA.diagnosis diag
JOIN :TNX_SCHEMA.mapping ON diag.code_system || ':' || diag.code = mapping.provider_code
WHERE (mapping.mt_code like 'UMLS:ICD10CM:%' OR mapping.mt_code like 'UMLS:ICD9CM:%')
AND YEAR(date) >= (YEAR(CURRENT_DATE())-5) AND YEAR(date) < YEAR(CURRENT_DATE())
AND diag.orphan = FALSE
)
);
-- unique encounters with at least one ICD9/10 diagnosis in timeframe
INSERT INTO :TNX_SCHEMA.ctsa
(
SELECT 'uniq_enc_icd_dx',
(
SELECT count(distinct enc.encounter_id)
FROM ENCOUNTER_1YR enc
JOIN :TNX_SCHEMA.diagnosis diag ON enc.encounter_id = diag.encounter_id
JOIN :TNX_SCHEMA.mapping ON diag.code_system || ':' || diag.code = mapping.provider_code
WHERE (mapping.mt_code like 'UMLS:ICD10CM:%' OR mapping.mt_code like 'UMLS:ICD9CM:%')
AND diag.orphan = false
),
(
SELECT count(distinct enc.encounter_id)
FROM ENCOUNTER_5YR enc
JOIN :TNX_SCHEMA.diagnosis diag ON enc.encounter_id = diag.encounter_id
JOIN :TNX_SCHEMA.mapping ON diag.code_system || ':' || diag.code = mapping.provider_code
WHERE (mapping.mt_code like 'UMLS:ICD10CM:%' OR mapping.mt_code like 'UMLS:ICD9CM:%')
AND diag.orphan = false
)
);
---------------------------------------------------------------------------------------------------------
-- 7. SNOMED Diagnosis Domain
---------------------------------------------------------------------------------------------------------
\o
SELECT 'SNOMED DIAG DOMAIN' as log_entry;
\o /dev/null
-- unique patients with a SNOMED in timeframe
INSERT INTO :TNX_SCHEMA.ctsa
(
SELECT 'uniq_pt_snomed_dx', 0, 0
);
-- unique encounters with at least one SNOMED in timeframe
INSERT INTO :TNX_SCHEMA.ctsa
(
SELECT 'uniq_enc_snomed_dx', 0, 0
);
---------------------------------------------------------------------------------------------------------
-- 8. ICD9/10 Procedure Domain
---------------------------------------------------------------------------------------------------------
\o
SELECT 'ICD9/10 PROCEDURE DOMAIN' as log_entry;
\o /dev/null
-- unique patients with an ICD9/10 procedure in timeframe
INSERT INTO :TNX_SCHEMA.ctsa
(
SELECT 'uniq_pt_icd_proc',
(
SELECT count(distinct proc.patient_id)
FROM :TNX_SCHEMA.procedure proc
JOIN :TNX_SCHEMA.mapping ON proc.code_system || ':' || proc.code = mapping.provider_code
WHERE (mapping.mt_code like 'UMLS:ICD10PCS:%' OR mapping.mt_code like 'UMLS:ICD9CM:%')
AND YEAR(date) = (YEAR(CURRENT_DATE())-1)
AND proc.orphan = FALSE
),
(
SELECT count(distinct proc.patient_id)
FROM :TNX_SCHEMA.procedure proc
JOIN :TNX_SCHEMA.mapping ON proc.code_system || ':' || proc.code = mapping.provider_code
WHERE (mapping.mt_code like 'UMLS:ICD10PCS:%' OR mapping.mt_code like 'UMLS:ICD9CM:%')
AND YEAR(date) >= (YEAR(CURRENT_DATE())-5) AND YEAR(date) < YEAR(CURRENT_DATE())
AND proc.orphan = FALSE
)
);
-- unique encounters with at least one ICD9/10 procedure in timeframe
INSERT INTO :TNX_SCHEMA.ctsa
(
SELECT 'uniq_enc_icd_proc',
(
SELECT count(distinct enc.encounter_id)
FROM ENCOUNTER_1YR enc
JOIN :TNX_SCHEMA.procedure proc ON enc.encounter_id = proc.encounter_id
JOIN :TNX_SCHEMA.mapping ON proc.code_system || ':' || proc.code = mapping.provider_code
WHERE (mapping.mt_code like 'UMLS:ICD10PCS:%' OR mapping.mt_code like 'UMLS:ICD9CM:%')
AND proc.orphan = FALSE
),
(
SELECT count(distinct enc.encounter_id)
FROM ENCOUNTER_5YR enc
JOIN :TNX_SCHEMA.procedure proc ON enc.encounter_id = proc.encounter_id
JOIN :TNX_SCHEMA.mapping ON proc.code_system || ':' || proc.code = mapping.provider_code
WHERE (mapping.mt_code like 'UMLS:ICD10PCS:%' OR mapping.mt_code like 'UMLS:ICD9CM:%')
AND proc.orphan = FALSE
)
);
---------------------------------------------------------------------------------------------------------
-- 9. CPT or HCPCS Procedure Domain
---------------------------------------------------------------------------------------------------------
\o
SELECT 'CPT/HCPCS DOMAIN' as log_entry;
\o /dev/null
-- unique patients with an CPT or HCPCS procedure in timeframe
INSERT INTO :TNX_SCHEMA.ctsa
(
SELECT 'uniq_pt_cpt',
(
SELECT count(distinct proc.patient_id)
FROM :TNX_SCHEMA.procedure proc
JOIN :TNX_SCHEMA.mapping ON proc.code_system || ':' || proc.code = mapping.provider_code
WHERE (mapping.mt_code like 'UMLS:CPT:%' OR mapping.mt_code like 'UMLS:HCPCS:%')
AND YEAR(date) = (YEAR(CURRENT_DATE())-1)
AND proc.orphan = FALSE
),
(
SELECT count(distinct proc.patient_id)
FROM :TNX_SCHEMA.procedure proc
JOIN :TNX_SCHEMA.mapping ON proc.code_system || ':' || proc.code = mapping.provider_code
WHERE (mapping.mt_code like 'UMLS:CPT:%' OR mapping.mt_code like 'UMLS:HCPCS:%')
AND YEAR(date) >= (YEAR(CURRENT_DATE())-5) AND YEAR(date) < YEAR(CURRENT_DATE())
AND proc.orphan = FALSE
)
);
-- unique encounters with at least one CPT or HCPCS procedure in timeframe
INSERT INTO :TNX_SCHEMA.ctsa
(
SELECT 'uniq_enc_cpt',
(
SELECT count(distinct enc.encounter_id)
FROM ENCOUNTER_1YR enc
JOIN :TNX_SCHEMA.procedure proc ON enc.encounter_id = proc.encounter_id
JOIN :TNX_SCHEMA.mapping ON proc.code_system || ':' || proc.code = mapping.provider_code
WHERE (mapping.mt_code like 'UMLS:CPT:%' OR mapping.mt_code like 'UMLS:HCPCS:%')
AND proc.orphan = FALSE
),
(
SELECT count(distinct enc.encounter_id)
FROM ENCOUNTER_5YR enc
JOIN :TNX_SCHEMA.procedure proc ON enc.encounter_id = proc.encounter_id
JOIN :TNX_SCHEMA.mapping ON proc.code_system || ':' || proc.code = mapping.provider_code
WHERE (mapping.mt_code like 'UMLS:CPT:%' OR mapping.mt_code like 'UMLS:HCPCS:%')
AND proc.orphan = FALSE
)
);
---------------------------------------------------------------------------------------------------------
-- 10. SNOMED Procedure Domain
---------------------------------------------------------------------------------------------------------
\o
SELECT 'SNOMED PROCEDURE DOMAIN' as log_entry;
\o /dev/null
-- unique patients with an SNOMED procedure in timeframe
INSERT INTO :TNX_SCHEMA.ctsa
(
SELECT 'uniq_pt_snomed_proc',
(
SELECT count(distinct proc.patient_id)
FROM :TNX_SCHEMA.procedure proc
JOIN :TNX_SCHEMA.mapping ON proc.code_system || ':' || proc.code = mapping.provider_code
WHERE mapping.mt_code like 'UMLS:SNOMED:%'
AND YEAR(date) = (YEAR(CURRENT_DATE())-1)
AND proc.orphan = FALSE
),
(
SELECT count(distinct proc.patient_id)
FROM :TNX_SCHEMA.procedure proc
JOIN :TNX_SCHEMA.mapping ON proc.code_system || ':' || proc.code = mapping.provider_code
WHERE mapping.mt_code like 'UMLS:SNOMED:%'
AND YEAR(date) >= (YEAR(CURRENT_DATE())-5) AND YEAR(date) < YEAR(CURRENT_DATE())
AND proc.orphan = FALSE
)
);
-- unique encounters with at least one SNOMED procedure in timeframe
INSERT INTO :TNX_SCHEMA.ctsa
(
SELECT 'uniq_enc_snomed_proc',
(
SELECT count(distinct enc.encounter_id)
FROM ENCOUNTER_1YR enc
JOIN :TNX_SCHEMA.procedure proc ON enc.encounter_id = proc.encounter_id
JOIN :TNX_SCHEMA.mapping ON proc.code_system || ':' || proc.code = mapping.provider_code
WHERE mapping.mt_code like 'UMLS:SNOMED:%'
AND proc.orphan = FALSE
),
(
SELECT count(distinct enc.encounter_id)
FROM ENCOUNTER_5YR enc
JOIN :TNX_SCHEMA.procedure proc ON enc.encounter_id = proc.encounter_id
JOIN :TNX_SCHEMA.mapping ON proc.code_system || ':' || proc.code = mapping.provider_code
WHERE mapping.mt_code like 'UMLS:SNOMED:%'
AND proc.orphan = FALSE
)
);
---------------------------------------------------------------------------------------------------------
-- 11. Free Text Data Domain
---------------------------------------------------------------------------------------------------------
\o
SELECT 'FREE TEXT DOMAIN' as log_entry;
\o /dev/null
-- has nlp?
INSERT INTO :TNX_SCHEMA.ctsa(
SELECT 'nlp_any',
CASE WHEN nlp_patient_count > 0 THEN 1 ELSE 0 END,
CASE WHEN nlp_patient_count > 0 THEN 1 ELSE 0 END
FROM
(
SELECT count(1) AS nlp_patient_count FROM NLP_PATIENTS
) nlp_patients
);
-- unique patients with free text note in timeframe
INSERT INTO :TNX_SCHEMA.ctsa
(
SELECT 'uniq_pt_note',
(
SELECT count(distinct patient_id)
FROM
(
SELECT distinct patient_id FROM :TNX_SCHEMA.diagnosis WHERE source_type = 'NLP' AND YEAR(date) = (YEAR(CURRENT_DATE())-1)
UNION
SELECT distinct patient_id FROM :TNX_SCHEMA.medication WHERE source_type = 'NLP' AND YEAR(start_date) = (YEAR(CURRENT_DATE())-1)
UNION
SELECT distinct patient_id FROM :TNX_SCHEMA.lab_result WHERE source_type = 'NLP' AND YEAR(test_date) = (YEAR(CURRENT_DATE())-1)
UNION
SELECT distinct patient_id FROM :TNX_SCHEMA.vital_signs WHERE source_type = 'NLP' AND YEAR(measure_date) = (YEAR(CURRENT_DATE())-1)
UNION
SELECT distinct patient_id FROM :TNX_SCHEMA.oncology WHERE source_type = 'NLP' AND YEAR(observation_date) = (YEAR(CURRENT_DATE())-1)
UNION
SELECT distinct patient_id FROM :TNX_SCHEMA.tumor_properties WHERE source_type = 'NLP' AND YEAR(observation_date) = (YEAR(CURRENT_DATE())-1)
) nlp_one_year
),
(
SELECT count(distinct patient_id)
FROM
(
SELECT distinct patient_id FROM :TNX_SCHEMA.diagnosis WHERE source_type = 'NLP' AND YEAR(date) >= (YEAR(CURRENT_DATE())-5) AND YEAR(date) < YEAR(CURRENT_DATE())
UNION
SELECT distinct patient_id FROM :TNX_SCHEMA.medication WHERE source_type = 'NLP' AND YEAR(start_date) >= (YEAR(CURRENT_DATE())-5) AND YEAR(start_date) < YEAR(CURRENT_DATE())
UNION
SELECT distinct patient_id FROM :TNX_SCHEMA.lab_result WHERE source_type = 'NLP' AND YEAR(test_date)>= (YEAR(CURRENT_DATE())-5) AND YEAR(test_date) < YEAR(CURRENT_DATE())
UNION
SELECT distinct patient_id FROM :TNX_SCHEMA.vital_signs WHERE source_type = 'NLP' AND YEAR(measure_date) >= (YEAR(CURRENT_DATE())-5) AND YEAR(measure_date) < YEAR(CURRENT_DATE())
UNION
SELECT distinct patient_id FROM :TNX_SCHEMA.oncology WHERE source_type = 'NLP' AND YEAR(observation_date) >= (YEAR(CURRENT_DATE())-5) AND YEAR(observation_date) < YEAR(CURRENT_DATE())
UNION
SELECT distinct patient_id FROM :TNX_SCHEMA.tumor_properties WHERE source_type = 'NLP' AND YEAR(observation_date) >= (YEAR(CURRENT_DATE())-5) AND YEAR(observation_date) < YEAR(CURRENT_DATE())
) nlp_five_year
)
);
-- unique encounters with at least one free text note in timeframe
INSERT INTO :TNX_SCHEMA.ctsa
(
SELECT 'uniq_enc_note',
(
SELECT count(distinct enc.encounter_id)
FROM ENCOUNTER_1YR enc
JOIN NLP_PATIENTS nlp ON enc.encounter_id = nlp.encounter_id
),
(
SELECT count(distinct enc.encounter_id)
FROM ENCOUNTER_5YR enc
JOIN NLP_PATIENTS nlp ON enc.encounter_id = nlp.encounter_id
)
);
---------------------------------------------------------------------------------------------------------
-- 12. Vitals Domain
---------------------------------------------------------------------------------------------------------
\o
SELECT 'VITALS DOMAIN' as log_entry;
\o /dev/null
--unique encounters with at least one vital sign coded in timeframe
INSERT INTO :TNX_SCHEMA.ctsa
(
SELECT 'uniq_enc_vital_sign',
(
SELECT count(distinct enc.encounter_id)
FROM ENCOUNTER_1YR enc
JOIN
(
SELECT distinct encounter_id
FROM :TNX_SCHEMA.vital_signs
UNION
SELECT distinct encounter_id
FROM :TNX_SCHEMA.lab_result lr
JOIN :TNX_SCHEMA.mapping ON lr.observation_code_system || ':' || lr.observation_code = mapping.provider_code
WHERE mt_code IN
('UMLS:LNC:11948-7', 'UMLS:LNC:8889-8', 'UMLS:LNC:76477-9', 'UMLS:LNC:76476-1', 'UMLS:LNC:73799-9', 'UMLS:LNC:73795-7',
'UMLS:LNC:60978-4', 'UMLS:LNC:57068-9', 'UMLS:LNC:55283-6', 'UMLS:LNC:8867-4', 'UMLS:LNC:8893-0', 'UMLS:LNC:8892-2',
'UMLS:LNC:8891-4', 'UMLS:LNC:8890-6', 'UMLS:LNC:8450-9', 'UMLS:LNC:76534-7', 'UMLS:LNC:76215-3', 'UMLS:LNC:75997-7',
'UMLS:LNC:87741-5', 'UMLS:LNC:87739-9', 'UMLS:LNC:8479-8', 'UMLS:LNC:8461-6', 'UMLS:LNC:8460-8', 'UMLS:LNC:8459-0',
'UMLS:LNC:8452-5', 'UMLS:LNC:8451-7', 'UMLS:LNC:8480-6', 'UMLS:LNC:59576-9', 'UMLS:LNC:59575-1', 'UMLS:LNC:59574-4',
'UMLS:LNC:8302-2', 'UMLS:LNC:8308-9', 'UMLS:LNC:8307-1', 'UMLS:LNC:8306-3', 'UMLS:LNC:8305-5', 'UMLS:LNC:8301-4',
'UMLS:LNC:3138-5', 'UMLS:LNC:3137-7', 'UMLS:LNC:28642-7', 'UMLS:LNC:28643-5', 'UMLS:LNC:2713-6', 'UMLS:LNC:20564-1',
'UMLS:LNC:2708-6', 'UMLS:LNC:19224-5', 'UMLS:LNC:51733-4', 'UMLS:LNC:51731-8', 'UMLS:LNC:74105-8', 'UMLS:LNC:51732-6',
'UMLS:LNC:59408-5', 'UMLS:LNC:68363-1', 'UMLS:LNC:59418-4', 'UMLS:LNC:59407-7', 'UMLS:LNC:2711-0', 'UMLS:LNC:2709-4',
'UMLS:LNC:8331-1', 'UMLS:LNC:8330-3', 'UMLS:LNC:8329-5', 'UMLS:LNC:8328-7', 'UMLS:LNC:8309-7', 'UMLS:LNC:76278-1',
'UMLS:LNC:76011-6', 'UMLS:LNC:76010-8', 'UMLS:LNC:8334-5', 'UMLS:LNC:8333-7', 'UMLS:LNC:8332-9', 'UMLS:LNC:60834-9',
'UMLS:LNC:60833-1', 'UMLS:LNC:60830-7', 'UMLS:LNC:8310-5', 'UMLS:LNC:75987-8', 'UMLS:LNC:75539-7', 'UMLS:LNC:61009-7',
'UMLS:LNC:61008-9', 'UMLS:LNC:60955-2', 'UMLS:LNC:60838-0', 'UMLS:LNC:60836-4', 'UMLS:LNC:60835-6', 'UMLS:LNC:8290-9',
'UMLS:LNC:8288-3', 'UMLS:LNC:8287-5', 'UMLS:LNC:9843-4', 'UMLS:LNC:8291-7', 'UMLS:LNC:8303-0', 'UMLS:LNC:8454-1',
'UMLS:LNC:8453-3', 'UMLS:LNC:8447-5', 'UMLS:LNC:8446-7', 'UMLS:LNC:76535-4', 'UMLS:LNC:76213-8', 'UMLS:LNC:75995-1',
'UMLS:LNC:8462-4', 'UMLS:LNC:87740-7', 'UMLS:LNC:87736-5', 'UMLS:LNC:8455-8', 'UMLS:LNC:39156-5', 'UMLS:LNC:8336-0',
'UMLS:LNC:76270-8', 'UMLS:LNC:76174-2', 'UMLS:LNC:76173-4', 'UMLS:LNC:9279-1', 'UMLS:LNC:76172-6', 'UMLS:LNC:76171-8',
'UMLS:LNC:76170-0', 'UMLS:LNC:19840-8', 'UMLS:LNC:19839-0', 'UMLS:LNC:8277-6', 'UMLS:LNC:3139-3', 'UMLS:LNC:3140-1',
'UMLS:LNC:3141-9', 'UMLS:LNC:8335-2', 'UMLS:LNC:3142-7', 'UMLS:LNC:29463-7', 'UMLS:LNC:8289-1')
) vitals ON enc.encounter_id = vitals.encounter_id
),
(
SELECT count(distinct enc.encounter_id)
FROM ENCOUNTER_5YR enc
JOIN
(
SELECT distinct encounter_id
FROM :TNX_SCHEMA.vital_signs
UNION
SELECT distinct encounter_id
FROM :TNX_SCHEMA.lab_result lr
JOIN :TNX_SCHEMA.mapping ON lr.observation_code_system || ':' || lr.observation_code = mapping.provider_code
WHERE mt_code IN
('UMLS:LNC:11948-7', 'UMLS:LNC:8889-8', 'UMLS:LNC:76477-9', 'UMLS:LNC:76476-1', 'UMLS:LNC:73799-9', 'UMLS:LNC:73795-7',
'UMLS:LNC:60978-4', 'UMLS:LNC:57068-9', 'UMLS:LNC:55283-6', 'UMLS:LNC:8867-4', 'UMLS:LNC:8893-0', 'UMLS:LNC:8892-2',
'UMLS:LNC:8891-4', 'UMLS:LNC:8890-6', 'UMLS:LNC:8450-9', 'UMLS:LNC:76534-7', 'UMLS:LNC:76215-3', 'UMLS:LNC:75997-7',
'UMLS:LNC:87741-5', 'UMLS:LNC:87739-9', 'UMLS:LNC:8479-8', 'UMLS:LNC:8461-6', 'UMLS:LNC:8460-8', 'UMLS:LNC:8459-0',
'UMLS:LNC:8452-5', 'UMLS:LNC:8451-7', 'UMLS:LNC:8480-6', 'UMLS:LNC:59576-9', 'UMLS:LNC:59575-1', 'UMLS:LNC:59574-4',
'UMLS:LNC:8302-2', 'UMLS:LNC:8308-9', 'UMLS:LNC:8307-1', 'UMLS:LNC:8306-3', 'UMLS:LNC:8305-5', 'UMLS:LNC:8301-4',
'UMLS:LNC:3138-5', 'UMLS:LNC:3137-7', 'UMLS:LNC:28642-7', 'UMLS:LNC:28643-5', 'UMLS:LNC:2713-6', 'UMLS:LNC:20564-1',
'UMLS:LNC:2708-6', 'UMLS:LNC:19224-5', 'UMLS:LNC:51733-4', 'UMLS:LNC:51731-8', 'UMLS:LNC:74105-8', 'UMLS:LNC:51732-6',
'UMLS:LNC:59408-5', 'UMLS:LNC:68363-1', 'UMLS:LNC:59418-4', 'UMLS:LNC:59407-7', 'UMLS:LNC:2711-0', 'UMLS:LNC:2709-4',
'UMLS:LNC:8331-1', 'UMLS:LNC:8330-3', 'UMLS:LNC:8329-5', 'UMLS:LNC:8328-7', 'UMLS:LNC:8309-7', 'UMLS:LNC:76278-1',
'UMLS:LNC:76011-6', 'UMLS:LNC:76010-8', 'UMLS:LNC:8334-5', 'UMLS:LNC:8333-7', 'UMLS:LNC:8332-9', 'UMLS:LNC:60834-9',
'UMLS:LNC:60833-1', 'UMLS:LNC:60830-7', 'UMLS:LNC:8310-5', 'UMLS:LNC:75987-8', 'UMLS:LNC:75539-7', 'UMLS:LNC:61009-7',
'UMLS:LNC:61008-9', 'UMLS:LNC:60955-2', 'UMLS:LNC:60838-0', 'UMLS:LNC:60836-4', 'UMLS:LNC:60835-6', 'UMLS:LNC:8290-9',
'UMLS:LNC:8288-3', 'UMLS:LNC:8287-5', 'UMLS:LNC:9843-4', 'UMLS:LNC:8291-7', 'UMLS:LNC:8303-0', 'UMLS:LNC:8454-1',
'UMLS:LNC:8453-3', 'UMLS:LNC:8447-5', 'UMLS:LNC:8446-7', 'UMLS:LNC:76535-4', 'UMLS:LNC:76213-8', 'UMLS:LNC:75995-1',
'UMLS:LNC:8462-4', 'UMLS:LNC:87740-7', 'UMLS:LNC:87736-5', 'UMLS:LNC:8455-8', 'UMLS:LNC:39156-5', 'UMLS:LNC:8336-0',
'UMLS:LNC:76270-8', 'UMLS:LNC:76174-2', 'UMLS:LNC:76173-4', 'UMLS:LNC:9279-1', 'UMLS:LNC:76172-6', 'UMLS:LNC:76171-8',
'UMLS:LNC:76170-0', 'UMLS:LNC:19840-8', 'UMLS:LNC:19839-0', 'UMLS:LNC:8277-6', 'UMLS:LNC:3139-3', 'UMLS:LNC:3140-1',
'UMLS:LNC:3141-9', 'UMLS:LNC:8335-2', 'UMLS:LNC:3142-7', 'UMLS:LNC:29463-7', 'UMLS:LNC:8289-1')
) vital_signs ON enc.encounter_id = vital_signs.encounter_id
)
);
---------------------------------------------------------------------------------------------------------
-- 13. Behavioral and or/ Social Determinants of Health
---------------------------------------------------------------------------------------------------------
\o
SELECT 'SOCIAL DETERMINANTS OF HEALTH' as log_entry;
\o /dev/null
-- unique patients over 12 with at least one smoking code from list in time frame
INSERT INTO :TNX_SCHEMA.ctsa
(
SELECT 'uniq_pt_smoking',
(
SELECT count(distinct diag.patient_id)
FROM :TNX_SCHEMA.diagnosis diag
JOIN :TNX_SCHEMA.patient p ON diag.patient_id = p.patient_id
JOIN :TNX_SCHEMA.mapping ON diag.code_system || ':' || diag.code = mapping.provider_code
WHERE AGE_IN_YEARS(diag.date, p.birth_date) > 12
AND mapping.mt_code IN
(
'UMLS:ICD10CM:Z87.891', 'UMLS:ICD10CM:F17.20', 'UMLS:ICD10CM:F17.200', 'UMLS:ICD10CM:F17.201',
'UMLS:ICD10CM:F17.203', 'UMLS:ICD10CM:F17.208', 'UMLS:ICD10CM:F17.209', 'UMLS:ICD10CM:F17.21',
'UMLS:ICD10CM:F17.210', 'UMLS:ICD10CM:F17.211', 'UMLS:ICD10CM:F17.213', 'UMLS:ICD10CM:F17.218',
'UMLS:ICD10CM:F17.219'
)
AND YEAR(date) = (YEAR(CURRENT_DATE())-1)
),
(
SELECT count(distinct diag.patient_id)
FROM :TNX_SCHEMA.diagnosis diag
JOIN :TNX_SCHEMA.patient p ON diag.patient_id = p.patient_id
JOIN :TNX_SCHEMA.mapping ON diag.code_system || ':' || diag.code = mapping.provider_code
WHERE AGE_IN_YEARS(diag.date, p.birth_date) > 12
AND mapping.mt_code IN
(
'UMLS:ICD10CM:Z87.891', 'UMLS:ICD10CM:F17.20', 'UMLS:ICD10CM:F17.200', 'UMLS:ICD10CM:F17.201',
'UMLS:ICD10CM:F17.203', 'UMLS:ICD10CM:F17.208', 'UMLS:ICD10CM:F17.209', 'UMLS:ICD10CM:F17.21',
'UMLS:ICD10CM:F17.210', 'UMLS:ICD10CM:F17.211', 'UMLS:ICD10CM:F17.213', 'UMLS:ICD10CM:F17.218',
'UMLS:ICD10CM:F17.219'
)
AND YEAR(date) >= (YEAR(CURRENT_DATE())-5) AND YEAR(date) < YEAR(CURRENT_DATE())
)
);
-- unique patients with at least one opioid code from list in time frame
INSERT INTO :TNX_SCHEMA.ctsa
(
--opiod concepts
WITH methadone_concepts AS (
SELECT 'NDC:00054039168' AS concept
UNION SELECT 'NDC:00054039268' AS concept
UNION SELECT 'NDC:00054070920' AS concept
UNION SELECT 'NDC:00054070925' AS concept
UNION SELECT 'NDC:00054071020' AS concept
UNION SELECT 'NDC:00054071025' AS concept
UNION SELECT 'NDC:00054355344' AS concept
UNION SELECT 'NDC:00054355563' AS concept
UNION SELECT 'NDC:00054355663' AS concept
UNION SELECT 'NDC:00054421825' AS concept
UNION SELECT 'NDC:00054421925' AS concept
UNION SELECT 'NDC:00054453825' AS concept
UNION SELECT 'NDC:00054457025' AS concept
UNION SELECT 'NDC:00054457125' AS concept
UNION SELECT 'NDC:00054855324' AS concept
UNION SELECT 'NDC:00054855424' AS concept
UNION SELECT 'NDC:00406052710' AS concept
UNION SELECT 'NDC:00406052715' AS concept
UNION SELECT 'NDC:00406054034' AS concept
UNION SELECT 'NDC:00406254001' AS concept
UNION SELECT 'NDC:00406575501' AS concept
UNION SELECT 'NDC:00406575523' AS concept
UNION SELECT 'NDC:00406575562' AS concept
UNION SELECT 'NDC:00406577101' AS concept
UNION SELECT 'NDC:00406577123' AS concept
UNION SELECT 'NDC:00406577162' AS concept
UNION SELECT 'NDC:00406872510' AS concept
UNION SELECT 'NDC:00406872515' AS concept
UNION SELECT 'NDC:00527192736' AS concept
UNION SELECT 'NDC:00527192739' AS concept
UNION SELECT 'NDC:00904653060' AS concept
UNION SELECT 'NDC:00904653061' AS concept
UNION SELECT 'NDC:13107008801' AS concept
UNION SELECT 'NDC:13107008830' AS concept
UNION SELECT 'NDC:13107008899' AS concept
UNION SELECT 'NDC:13107008901' AS concept
UNION SELECT 'NDC:13107008930' AS concept
UNION SELECT 'NDC:13107008999' AS concept
UNION SELECT 'NDC:17478038020' AS concept
UNION SELECT 'NDC:17856039201' AS concept
UNION SELECT 'NDC:17856039202' AS concept
UNION SELECT 'NDC:17856052601' AS concept
UNION SELECT 'NDC:17856052602' AS concept
UNION SELECT 'NDC:17856052701' AS concept
UNION SELECT 'NDC:17856052702' AS concept
UNION SELECT 'NDC:17856069401' AS concept
UNION SELECT 'NDC:17856069402' AS concept
UNION SELECT 'NDC:17856355301' AS concept
UNION SELECT 'NDC:17856355302' AS concept
UNION SELECT 'NDC:17856355401' AS concept
UNION SELECT 'NDC:17856355402' AS concept
UNION SELECT 'NDC:17856355501' AS concept
UNION SELECT 'NDC:17856355502' AS concept
UNION SELECT 'NDC:17856355504' AS concept
UNION SELECT 'NDC:17856355505' AS concept
UNION SELECT 'NDC:17856355508' AS concept
UNION SELECT 'NDC:17856355605' AS concept
UNION SELECT 'NDC:17856355606' AS concept
UNION SELECT 'NDC:31722094601' AS concept
UNION SELECT 'NDC:31722094701' AS concept
UNION SELECT 'NDC:35356083401' AS concept
UNION SELECT 'NDC:35356083430' AS concept
UNION SELECT 'NDC:35356083460' AS concept
UNION SELECT 'NDC:35356083490' AS concept
UNION SELECT 'NDC:35356083530' AS concept
UNION SELECT 'NDC:35356083560' AS concept
UNION SELECT 'NDC:35356083590' AS concept
UNION SELECT 'NDC:42806031701' AS concept
UNION SELECT 'NDC:42806031801' AS concept
UNION SELECT 'NDC:52959038602' AS concept
UNION SELECT 'NDC:52959038630' AS concept
UNION SELECT 'NDC:52959038660' AS concept
UNION SELECT 'NDC:52959038690' AS concept
UNION SELECT 'NDC:52959043502' AS concept
UNION SELECT 'NDC:52959043530' AS concept
UNION SELECT 'NDC:52959043560' AS concept
UNION SELECT 'NDC:52959043590' AS concept
UNION SELECT 'NDC:55700088201' AS concept
UNION SELECT 'NDC:55700088230' AS concept
UNION SELECT 'NDC:55700088260' AS concept
UNION SELECT 'NDC:55700088290' AS concept
UNION SELECT 'NDC:57664060288' AS concept
UNION SELECT 'NDC:57664060388' AS concept
UNION SELECT 'NDC:60687020932' AS concept
UNION SELECT 'NDC:60687020933' AS concept
UNION SELECT 'NDC:60687021401' AS concept
UNION SELECT 'NDC:60687021411' AS concept
UNION SELECT 'NDC:61919067030' AS concept
UNION SELECT 'NDC:61919067060' AS concept
UNION SELECT 'NDC:61919067090' AS concept
UNION SELECT 'NDC:63629102701' AS concept
UNION SELECT 'NDC:63739000610' AS concept
UNION SELECT 'NDC:66689069430' AS concept
UNION SELECT 'NDC:66689069479' AS concept
UNION SELECT 'NDC:66689069530' AS concept
UNION SELECT 'NDC:66689069579' AS concept
UNION SELECT 'NDC:66689071116' AS concept
UNION SELECT 'NDC:66689071216' AS concept
UNION SELECT 'NDC:66689081010' AS concept
UNION SELECT 'NDC:66689082010' AS concept
UNION SELECT 'NDC:66689083699' AS concept
UNION SELECT 'NDC:66689089840' AS concept
UNION SELECT 'NDC:67457021720' AS concept
UNION SELECT 'NDC:67877011601' AS concept
UNION SELECT 'NDC:68084073801' AS concept
UNION SELECT 'NDC:68084073811' AS concept
UNION SELECT 'NDC:68094003159' AS concept
UNION SELECT 'NDC:68094003162' AS concept
UNION SELECT 'NDC:68462080001' AS concept
UNION SELECT 'NDC:68462080101' AS concept
UNION SELECT 'NDC:70166028401' AS concept
UNION SELECT 'NDC:70166028402' AS concept
UNION SELECT 'NDC:71335049301' AS concept
UNION SELECT 'NDC:71335049302' AS concept
UNION SELECT 'NDC:71335049303' AS concept
UNION SELECT 'NDC:71335049304' AS concept
UNION SELECT 'NDC:71335049305' AS concept
UNION SELECT 'NDC:71335049306' AS concept
UNION SELECT 'NDC:71335049307' AS concept
UNION SELECT 'NDC:71335073500' AS concept
UNION SELECT 'NDC:71335073501' AS concept
UNION SELECT 'NDC:71335073502' AS concept
UNION SELECT 'NDC:71335073503' AS concept
UNION SELECT 'NDC:71335073504' AS concept
UNION SELECT 'NDC:71335073505' AS concept
UNION SELECT 'NDC:71335073506' AS concept
UNION SELECT 'NDC:71335073507' AS concept
UNION SELECT 'NDC:71335073508' AS concept
UNION SELECT 'NDC:71335073509' AS concept
UNION SELECT 'NDC:71335110601' AS concept
UNION SELECT 'NDC:71335110602' AS concept
UNION SELECT 'NDC:71335110603' AS concept
UNION SELECT 'NDC:71335110604' AS concept
UNION SELECT 'NDC:71335110605' AS concept
UNION SELECT 'NDC:71335110606' AS concept
UNION SELECT 'NDC:71335110607' AS concept
UNION SELECT 'NDC:71335136000' AS concept
UNION SELECT 'NDC:71335136001' AS concept
UNION SELECT 'NDC:71335136002' AS concept
UNION SELECT 'NDC:71335136003' AS concept
UNION SELECT 'NDC:71335136004' AS concept
UNION SELECT 'NDC:71335136005' AS concept
UNION SELECT 'NDC:71335136006' AS concept
UNION SELECT 'NDC:71335136007' AS concept
UNION SELECT 'NDC:71335136008' AS concept
UNION SELECT 'NDC:71335136009' AS concept
UNION SELECT 'NDC:72865012001' AS concept
UNION SELECT 'NDC:72865012101' AS concept
UNION SELECT 'RxDrug:1990745' AS concept
UNION SELECT 'RxDrug:864706' AS concept
UNION SELECT 'RxDrug:864708' AS concept
UNION SELECT 'RxDrug:864712' AS concept
UNION SELECT 'RxDrug:864714' AS concept
UNION SELECT 'RxDrug:864718' AS concept
UNION SELECT 'RxDrug:864720' AS concept
UNION SELECT 'RxDrug:864737' AS concept
UNION SELECT 'RxDrug:864761' AS concept
UNION SELECT 'RxDrug:864769' AS concept
UNION SELECT 'RxDrug:864978' AS concept
UNION SELECT 'RxDrug:864980' AS concept
UNION SELECT 'RxDrug:864984' AS concept
UNION SELECT 'RxDrug:991147' AS concept
UNION SELECT 'RxDrug:991149' AS concept
UNION SELECT 'NLM:RXNORM:6813' AS concept
),
buprenorphine_concepts AS (
SELECT 'NDC:00054017613' AS concept
UNION SELECT 'NDC:00054017713' AS concept
UNION SELECT 'NDC:00054018813' AS concept
UNION SELECT 'NDC:00054018913' AS concept
UNION SELECT 'NDC:00093360121' AS concept
UNION SELECT 'NDC:00093360140' AS concept
UNION SELECT 'NDC:00093360221' AS concept
UNION SELECT 'NDC:00093360240' AS concept