TechReading.md

Tech papers on Current Reading List

Software Management Plan / SE

1. ELIXIR-STEERS M3.2 Report: First version of Software Management Plan interface implemented in Data Stewardship Wizard
2. machine-actionable Software Management Plan Ontology (maSMP Ontology)
3. Usage guidance (aka profiles) for the machine-actionable Software Management Plan Ontology
4. https://doi.org/10.37044/osf.io/k8znb
5. D4.4 - Guidelines for recommended metadata standard for research software within EOSC
6. Intelligent analysis for software data: research and applications
7. What Do We (Not) Know About Research Software Engineering?
8. The Research Software Encyclopedia: A Community Framework to Define Research Software
9. Rethinking Software Engineering in the Foundation Model Era: A Curated Catalogue of Challenges in the Development of Trustworthy FMware
10. Making Biomedical Research Software FAIR: Actionable Step-by-step Guidelines with a User-support Tool
11. Ten quick tips for building FAIR workflows
12. Understanding Fairness in Software Engineering: Insights from Stack Exchange Sites
13. Scicodes
14. Nine Best Practices for Research Software Registries and Repositories:A Concise Guide
15. Citation File Format (CFF) vs BibTeX Conversion
16. Software Heritage
17. https://edsbook.org/notebooks/about - also mentions RO-Crate, https://drive.google.com/file/d/1INJBUfC_YZf9qVtaZ_lMpSayaE2SXF5s/view
18. https://www.researchobject.org/ro-crate/
19. https://www.rohub.org/
20. RO-Crate
    • https://github.com/ResearchObject/ro-crate,
    • https://github.com/ResearchObject/ro-crate-py
    • https://www.rd-alliance.org/sites/default/files/2021-02-25-ro-crate-fdo-FINAL.pdf
    • https://pure.uva.nl/ws/files/89439203/ds_2022_5_2_ds_5_2_ds210053_ds_5_ds210053.pdf
    • https://catalogue.fair-impact.eu/resources/ro-crate
    • https://cs3mesh4eosc.eu/technologies/describo-and-ro-crate
    • https://about.workflowhub.eu/Workflow-RO-Crate/
    • https://gallantries.github.io/video-library/modules/ro-crate
21. Dias: Dynamic Rewriting of Pandas Code
22. In Database Data Imputation : https://doi.org/10.1145/3639326
23. DoppelGanger++: Towards Fast Dependency Graph Generation for Database Replay https://doi.org/10.1145/3639322
24. Machine Unlearning in Learned Databases: An Experimental Analysis https://doi.org/10.1145/3639304
25. Determining the Largest Overlap between Tables : https://doi.org/10.1145/3639303
26. Modeling Shifting Workloads for Learned Database Systems : https://doi.org/10.1145/3639293
27. Controllable Tabular Data Synthesis Using Diffusion Models : https://doi.org/10.1145/3639283
28. Spruce: a Fast yet Space-saving Structure for Dynamic Graph Storage : https://doi.org/10.1145/3639282
29. Optimizing Dataflow Systems for Scalable Interactive Visualization : https://doi.org/10.1145/3639276
30. LIT: Lightning-fast In-memory Temporal Indexing : https://doi.org/10.1145/3639275
31. Optimizing Nested Recursive Queries : https://doi.org/10.1145/3639271
32. https://github.com/earthlab/earthpy/blob/main/.zenodo.json

Data Versioning

1. DVC: Data Version Control - Git for Data & Models

Example Project : https://github.com/binzzheng/DVC-PyTorch

Software Citations

1. Journal Production Guidance for Software and Data Citations
2. Software Citation Principles
3. citation-file-format
4. cffinit
5. Citation File Format - Status and current challenges
6. How to cite and describe software
7. Software Citation ; datacite.org
8. Citation File Format 2021

Tech Bloggers (I like)

1. https://third-bit.com/ideas/research/
2. https://jzhao.xyz/
3. https://vickiboykis.com/

General SE

1. https://arxiv.org/abs/2310.10817
2. Knowledge Graph
3. https://wholetale.org/, https://github.com/whole-tale