thesis.tex

\input{preamble.tex}
\input{commands.tex}

\newif\iftoc
\newif\ifintro
\newif\ifbgs
\newif\iftfs
\newif\iflbps
\newif\ifbgm
\newif\ifpbp
\newif\ifsnep
\newif\ifccl

\def\compileall{1}
\toctrue    \tocfalse
\introtrue  \introfalse
\bgstrue  	\bgsfalse
\tfstrue    	\tfsfalse
\lbpstrue 	%\lbpsfalse
\bgmtrue  	\bgmfalse
\sneptrue 	\snepfalse
\pbptrue   	\pbpfalse
\ccltrue     \cclfalse

\if\compileall1
    \toctrue
    \introtrue
    \bgstrue
    \tfstrue
    \lbpstrue
    \bgmtrue
    \sneptrue
    \pbptrue
    \ccltrue
\fi

\newcommand{\itsepa}{\itsep0} % adjust all itseps in one shot

\reversemarginpar
\newcommand{\margnote}[1]{\marginpar{\hfill\fontsize{8}{0}{\idblue{(#1)}}}}

\usepackage{xspace}
\usepackage[backgroundcolor=Yellow!30,
			textsize=tiny]{todonotes}
			
\makeatletter
\renewcommand*{\cleardoublepage}{\clearpage\if@twoside \ifodd\c@page\else
\hbox{}%
\thispagestyle{empty}%
\newpage%
\if@twocolumn\hbox{}\newpage\fi\fi\fi}
\makeatother
    
\renewcommand\margnote[1]{\xspace}
\renewcommand{\P}{\mathbb P}

\newcommand\nudx{\nu(\!\dx)}
\renewcommand\transp{^t}

\usepackage{longtable}

\newcommand{\bif}{\text{BIF}}
\newcommand{\tbif}{\widetilde{\bif}}
\newcommand{\htbif}{\widehat\tbif}
\newcommand{\pd}{\text{PD}}
\newcommand{\hpd}{\widehat\pd}

%%%%%%%%%%%%%%%%%%%%%%%%%%
% COMMANDS FOR REVIEWING %
%%%%%%%%%%%%%%%%%%%%%%%%%%
\renewcommand{\check}[1]{}
%\renewcommand{\check}[1]{
%	\todo{\textbf{checked}: #1}\xspace
%	}
\newcommand{\add}[1]{}
%\newcommand{\add}[1]{
%	\todo[backgroundcolor=red!20,linecolor=red]{
%		\textbf{add}: #1
%		}
%	\xspace
%}
\newcommand{\addref}[1]{}
%\newcommand{\addref}{
%	\todo[backgroundcolor=green!20,linecolor=green]{
%		\textbf{add citation}
%		}
%	}


%%%%%%%%%%%%%%%%
\begin{document}

\thispagestyle{empty}
\input{parts/abstractpage}
\cleardoublepage



\input{parts/title}
\clearpage
\thispagestyle{empty}

\titleformat{\chapter}[hang]{\Huge\bfseries\sc\color{TitleCol}\raggedleft}{\thechapter\hspace{20pt}\textcolor{Gray}{$\mid$}\hspace{20pt}}{0pt}{\Huge\bfseries\color{TitleCol}\sc}


%%%% TABLE OF CONTENTS

\singlespacing
\setcounter{tocdepth}{2}
\setcounter{secnumdepth}{2}
\iftoc\tableofcontents\fi

\cleardoublepage
%%%% ACKNOWLEDGEMENTS
\input{parts/acks}
\thispagestyle{empty}
%\clearpage

%%%% NOTATIONS / ABBREVIATIONS

\raggedbottom
\input{parts/notations}

% --------------------------------------
% Now start the flushing + doublespacing

\doublespacing


%%%%%%%%%%%%%%%%%%%%%%
\chapter{Introduction}\setcounter{page}{1}\pagenumbering{arabic}

\ifintro\input{parts/introduction}\fi

%%%%%%%%%%%%%%%%%%%%%%%%%%
\part{Sampling Methods} % part I

%%%%%%%%%%%%%%%%%%%%
\chapter{\label{chap:BGsampling}Background}

\ifbgs\input{parts/bg_sampling}\fi

%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
\chapter{\label{chap:BIS}Backward Information Smoothing}

\iftfs\input{parts/twofilter}\fi

%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
\chapter{\label{chapBPSMRF}Bouncy Particle Sampler on Markov Random Fields}

\iflbps\input{parts/lbps}\fi

%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
% SECOND PART -------------------
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
\part{Approximate Bayesian Inference} % part II

%%%%%%%%%%%%%%%%%%%%
\chapter{Background}

\ifbgm\input{parts/bg_messpass}\fi

\chapter[Expectation Propagation for Distributed Bayesian Inference]{\label{chap:EPforDBI}Expectation Propagation for\\ Distributed Bayesian Inference}
\ifsnep\input{parts/snep}\fi

\chapter[Expectation Propagation for Particle Belief Propagation]{\label{chap:EPBP}Expectation Propagation for\\ Particle Belief Propagation}

\ifpbp\input{parts/pbp}\fi


%%%%%%%%%%%%%%%%%%%%
\chapter{Conclusion}

\ifccl\input{parts/conclusion}\fi

%%%%%%%%%%%


\setcounter{chapter}{0}
\renewcommand{\chaptername}{Paper}
\renewcommand{\thechapter}{\Alph{chapter}}

%\begin*{appendices}
\chapter{Appendix}
\input{parts/appendix}
\input{parts/appendix2}
%\end*{appendices}



% BIBLIOGRAPHY
% ------------
\newpage
\renewcommand{\bibname}{References}
\addcontentsline{toc}{chapter}{References}
\bibliographystyle{myabbrvnat}
\singlespacing
\begin{small}
\bibliography{texReferences}
\end{small}

%%%%%%%%%%%%%%
\end{document}