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@khanlab

Khan Computational Imaging Lab

  • 14 followers
  • Robarts Research Institute, Western University, London, Canada

Popular repositories Loading

  1. hippunfold hippunfold Public

    BIDS App for Hippunfold (automated hippocampal unfolding and subfield segmentation)

    Python 57 18

  2. snakebids snakebids Public

    Snakemake + BIDS

    Python 18 15

  3. tar2bids tar2bids Public

    Python 7 9

  4. neuroglia-helpers neuroglia-helpers Public

    Helper and wrapper scripts for using Singularity locally and on compute canada

    Shell 5 7

  5. autobids autobids Public archive

    Automated Dicom to BIDS and pipelines using compute canada

    Shell 5 4

  6. bids-tutorial bids-tutorial Public

    Tutorial on BIDS - Methods Lunch Feb 12

    5

Repositories

Showing 10 of 118 repositories
  • hippunfold Public

    BIDS App for Hippunfold (automated hippocampal unfolding and subfield segmentation)

    khanlab/hippunfold’s past year of commit activity
    Python 57 MIT 18 36 (2 issues need help) 5 Updated Apr 4, 2025
  • SPIMprep Public

    A Snakemake workflow for pre-processing single plane illumination microscopy (SPIM, aka lightsheet microscopy)

    khanlab/SPIMprep’s past year of commit activity
    Python 3 MIT 1 9 (4 issues need help) 2 Updated Apr 1, 2025
  • khanlab.github.io Public

    Khan Lab website

    khanlab/khanlab.github.io’s past year of commit activity
    HTML 2 10 1 2 Updated Apr 1, 2025
  • gcnn_dmri Public
    khanlab/gcnn_dmri’s past year of commit activity
    Python 1 MIT 0 0 1 Updated Apr 1, 2025
  • hippunfold-atlases Public

    Surface-based atlases for hippunfold v2.x

    khanlab/hippunfold-atlases’s past year of commit activity
    0 0 0 0 Updated Mar 31, 2025
  • example-snakemake Public Forked from tkkuehn/example-snakemake

    Snakemake tutorial, to be adapted for Brainhack 2025

    khanlab/example-snakemake’s past year of commit activity
    Python 0 2 0 0 Updated Mar 27, 2025
  • LOBE_analysis Public

    Snakemake workflow for LOBE study

    khanlab/LOBE_analysis’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Mar 20, 2025
  • SPIMquant Public

    SnakeBIDS app for quantitative analysis of SPIM (lightsheet) brain data

    khanlab/SPIMquant’s past year of commit activity
    Jupyter Notebook 1 0 2 1 Updated Mar 19, 2025
  • snakebids Public

    Snakemake + BIDS

    khanlab/snakebids’s past year of commit activity
    Python 18 MIT 15 21 6 Updated Mar 18, 2025
  • scattr Public

    BIDS app for structural connectivity between targeted regions

    khanlab/scattr’s past year of commit activity
    Python 4 MIT 3 5 (1 issue needs help) 1 Updated Mar 7, 2025
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