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scverse.github.io Public
Forked from scverse/scverse.github.ioscverse.org website
SCSS UpdatedApr 2, 2025 -
ome-zarr-models-py Public
Forked from ome-zarr-models/ome-zarr-models-pyA minimal Python package for reading OME-Zarr (meta)data
Python MIT License UpdatedApr 1, 2025 -
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spatialdata-io Public
Forked from scverse/spatialdata-ioPython BSD 3-Clause "New" or "Revised" License UpdatedMar 24, 2025 -
spatialdata-plot Public
Forked from scverse/spatialdata-plotStatic plotting for spatialdata
Python BSD 3-Clause "New" or "Revised" License UpdatedMar 22, 2025 -
multiscale-spatial-image Public
Forked from spatial-image/multiscale-spatial-imageGenerate a multiscale, chunked, multi-dimensional spatial image data structure that can serialized to OME-NGFF.
Python Apache License 2.0 UpdatedMar 16, 2025 -
napari-spatialdata Public
Forked from scverse/napari-spatialdataInteractive visualization of spatial omics data
Python BSD 3-Clause "New" or "Revised" License UpdatedMar 16, 2025 -
spatialdata Public
Forked from scverse/spatialdataAn open and universal framework for processing spatial omics data
Python BSD 3-Clause "New" or "Revised" License UpdatedMar 16, 2025 -
napari_docs Public
Forked from napari/docsDocumentation for napari (other than API docs)
Makefile BSD 3-Clause "New" or "Revised" License UpdatedMar 14, 2025 -
scvi-tutorials Public
Forked from scverse/scvi-tutorialsNotebooks used in scvi-tools tutorials
Jupyter Notebook BSD 3-Clause "New" or "Revised" License UpdatedFeb 28, 2025 -
anndataR Public
Forked from scverse/anndataRAnnData interoperability in R
R Other UpdatedFeb 28, 2025 -
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napari Public
Forked from napari/naparinapari: a fast, interactive, multi-dimensional image viewer for python
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spatialdata-notebooks Public
Forked from scverse/spatialdata-notebooksJupyter Notebook BSD 3-Clause "New" or "Revised" License UpdatedJan 15, 2025 -
linkml-arrays Public
Forked from linkml/linkml-arraysSupport for N-dimensional arrays in LinkML.
Python BSD 3-Clause "New" or "Revised" License UpdatedJan 9, 2025 -
xarray-dataclasses Public
Forked from astropenguin/xarray-dataclasses⚡ xarray data creation by data classes
Python MIT License UpdatedJan 4, 2025 -
squidpy Public
Forked from scverse/squidpySpatial Single Cell Analysis in Python
Python BSD 3-Clause "New" or "Revised" License UpdatedNov 6, 2024 -
numpydantic Public
Forked from p2p-ld/numpydanticType annotations for specifying, validating, and serializing arrays with arbitrary backends in Pydantic (and beyond)
Python MIT License UpdatedOct 19, 2024 -
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spatialdata-workshops Public
Forked from PMBio/spatialdata-workshopsJupyter Notebook BSD 3-Clause "New" or "Revised" License UpdatedSep 25, 2024 -
linkml Public
Forked from linkml/linkmlLinked Open Data Modeling Language
Python Other UpdatedSep 24, 2024 -
spatialdata-sandbox Public
Forked from giovp/spatialdata-sandboxJupyter Notebook GNU General Public License v3.0 UpdatedSep 23, 2024 -
napari-cell-gater Public
A napari plugin for cell marker gating.
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linkml-model Public
Forked from linkml/linkml-modelLink Modeling Language (LinkML) model
Python UpdatedJul 27, 2024 -
spatial-image Public
Forked from spatial-image/spatial-imageA multi-dimensional spatial image data structure for scientific Python.
Python MIT License UpdatedJul 17, 2024 -
vl-convert Public
Forked from vega/vl-convertUtilities for converting Vega-Lite specs from the command line and Python
Rust BSD 3-Clause "New" or "Revised" License UpdatedJun 24, 2024 -
altair Public
Forked from vega/altairDeclarative statistical visualization library for Python
Python BSD 3-Clause "New" or "Revised" License UpdatedJun 22, 2024 -
tensorstore Public
Forked from google/tensorstoreLibrary for reading and writing large multi-dimensional arrays.
C++ Other UpdatedJun 21, 2024 -
ome-zarr-py Public
Forked from ome/ome-zarr-pyImplementation of next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.
Python Other UpdatedJun 19, 2024 -
ome-ld Public
Forked from joshmoore/ome-ldLinked Data support for the OME Model
Python UpdatedMay 25, 2024