Harvard Medical School - Department of Biomedical Informatics

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370 repositories

i2b2v2-webclient
Public
JavaScript
•4•2•1•1•Updated Mar 20, 2025Mar 20, 2025
pic-sure-metadata-curation
Public
Parse and generate variable-level data to be exposed through the search interface.
SAS
•
Apache License 2.0
•2•2•0•0•Updated Mar 19, 2025Mar 19, 2025
pic-sure-bdc-release-control
Public
Apache License 2.0
•8•1•0•0•Updated Mar 19, 2025Mar 19, 2025
pic-sure-bdc-infrastructure
Public
HCL
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Apache License 2.0
•1•5•0•3•Updated Mar 19, 2025Mar 19, 2025
pic-sure-hpds
Public
Java
•
Apache License 2.0
•6•3•0•9•Updated Mar 19, 2025Mar 19, 2025
udi-grammar
Public
The Universal Discovery Interface Grammar.
TypeScript
•
MIT License
•0•2•0•2•Updated Mar 18, 2025Mar 18, 2025
PIC-SURE-Frontend
Public
A frontend for the PIC-SURE API
TypeScript
•
Apache License 2.0
•0•1•0•8•Updated Mar 18, 2025Mar 18, 2025
picsure-dictionary
Public
Java
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Apache License 2.0
•1•0•0•1•Updated Mar 18, 2025Mar 18, 2025
pic-sure-auth-microapp
Public
Java
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Apache License 2.0
•5•4•0•2•Updated Mar 18, 2025Mar 18, 2025
picsure-dictionary-etl
Public
Java
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Apache License 2.0
•0•0•0•0•Updated Mar 17, 2025Mar 17, 2025
hypatio-app
Public
Python
•0•4•0•9•Updated Mar 17, 2025Mar 17, 2025
dbmi-fileservice
Public
Python
•0•2•0•4•Updated Mar 17, 2025Mar 17, 2025
fhirquestionnaire
Public
HTML
•0•2•0•4•Updated Mar 17, 2025Mar 17, 2025
dbmisvc-starter
Public
Python
•0•1•0•3•Updated Mar 17, 2025Mar 17, 2025
actions
Public
0•0•0•50•Updated Mar 17, 2025Mar 17, 2025
CHIEF
Public
Clinical Histopathology Imaging Evaluation Foundation Model
Python
•
GNU Affero General Public License v3.0
•93•593•33•10•Updated Mar 17, 2025Mar 17, 2025
gehlenborglab-website
Public
Code for Gehlenborg Lab website.
website gehlenborglab hidivelab
TypeScript
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MIT License
•39•9•12•0•Updated Mar 15, 2025Mar 15, 2025
udi-training-data
Public
code for generating training data used for fine-tuning the LLM
Jupyter Notebook
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MIT License
•0•0•0•0•Updated Mar 14, 2025Mar 14, 2025
udi-grammar-py
Public
Python code for generating udi-grammar specifications.
Python
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MIT License
•0•0•0•0•Updated Mar 14, 2025Mar 14, 2025
pic-sure-hpds-genotype-load-example
Public
Jupyter Notebook
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Apache License 2.0
•1•3•0•0•Updated Mar 12, 2025Mar 12, 2025
udi-data-api-testing
Public
For testing the code generated for getting api data
Python
•0•0•0•0•Updated Mar 12, 2025Mar 12, 2025
vizarr
Public
A minimal Zarr image viewer based on Viv.
jupyter-notebooks gehlenborglab zarr viv imjoy
TypeScript
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MIT License
•22•143•19•6•Updated Mar 12, 2025Mar 12, 2025
chromoscope
Public
Interactive multiscale visualization for structural variation in human genomes
TypeScript
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MIT License
•7•68•35•3•Updated Mar 11, 2025Mar 11, 2025
udi-chat
Public
For experimenting with chat based interface for the Universal Discovery Interface.
TypeScript
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MIT License
•0•0•0•2•Updated Mar 10, 2025Mar 10, 2025
ETL-MissionControl-dbgap-submodule
Public
ETL-MissionControl-dbgap-submodule
Python
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Apache License 2.0
•0•0•0•0•Updated Mar 10, 2025Mar 10, 2025
Access-to-Data-using-PIC-SURE-API
Public
Jupyter Notebook
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Apache License 2.0
•8•7•0•0•Updated Mar 7, 2025Mar 7, 2025
ETLToolSuite-EntityGenerator
Public
This tool will generate Entity Files that can be used to load into Datasources.
Java
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Apache License 2.0
•1•0•0•0•Updated Mar 5, 2025Mar 5, 2025
viv
Public
Library for multiscale visualization of high-resolution multiplexed bioimaging data on the web. Directly renders Zarr and OME-TIFF.
imaging ome-tiff openmicroscopy gehlenborglab zarr hubmap viv
JavaScript
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MIT License
•47•302•47•8•Updated Mar 4, 2025Mar 4, 2025
pic-sure-services
Public
Java
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Apache License 2.0
•0•0•0•2•Updated Mar 4, 2025Mar 4, 2025
pic-sure-gic-institution-frontend
Public
JavaScript
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Apache License 2.0
•0•1•0•1•Updated Mar 4, 2025Mar 4, 2025