issues Search Results · repo:oschwengers/bakta language:Python
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inoschwengers/bakta (press backspace or delete to remove)Hello again, After encountering the aa_digest error I posted an issue about yesterday, I m now getting some (seemingly)
random behaviour of Bakta. I have a set of 10 genomes, 5 pretty well complete and ...
bug
amcomeau
- Opened 7 hours ago
- #373
Hello, I have been running the latest conda version of Bakta and have run into an error - some of my genomes complete
just fine, but then one of them is giving the following error (after first having an ...
bug
- Opened yesterday
- #372
Hi i just downloaded bakta 1.9.4 and the ver 5 light database . ive run the pipeline against an example . this is the
error i get (base) xxx@xxx-X470-AORUS-ULTRA-GAMING:~/Downloads/bakta-1.9.4/bin$
/home/xxx/Downloads/bakta-1.9.4/bin/bakta ...
bug
holzdan
- Opened 3 days ago
- #371
Hi Bakta authors,
I am running commands like: bakta --db our_db test.fasta --output test --force
with test.fasta like:
contig00001 len=209599 cov=52.3 corr=0 origname=NODE_1_length_209599_cov_52.283904_pilon ...
drxilu
- Opened 6 days ago
- #370
Hi, I tried to annotate the publically available genome https://www.ncbi.nlm.nih.gov/datasets/genome/GCF_001313365.1/
Which apparently had a lot of issues so the error I got may be due to this
I ran ...
bug
michoug
- Opened 23 days ago
- #369
Hi,
Thanks for the great tool! I just installed Bakta 1.11 on my macbook pro and I am trying to install the databases and
got the following issues:
First I ran the command: bakta_db download --output ...
bug
corkdagga
- 5
- Opened 29 days ago
- #368
cyxiang1027Thanks for developing bakta.
I would like to annotate Streptococcus pneumoniae genomes fore genes involved in bacteriocin
(antimicrobial/immunity/regulation). I have download the genes I am interested ...
help wanted
fconstancias
- 4
- Opened on Feb 5
- #361
Dear @oschwengers ,
Thanks for developing and maintaining Bakta. I am having a great time with the tool.
I just have a question regarding identifying and interpreting AMRfinder+. My apologies in advance ...
question
shaman-narayanasamy
- 5
- Opened on Jan 28
- #360
Hi, I installed Bakta with Conda, downloaded the database, but it doesn t seem to be able to extract files from the
database archive. I didn t try to download it with the --debug option, as this is a very ...
Footboard5358
- 4
- Opened on Dec 23, 2024
- #358
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