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@x-atlas-consortia

Atlas Consortia

A place for consortia who produce biologic data organized into atlases to share software resources.

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  1. ubkg-neo4j ubkg-neo4j Public

    A container implementation to serve the Unified Biomedical Knowledge Graph in Neo4j

    Shell 1

  2. ubkg-etl ubkg-etl Public

    A framework that combines data from the UMLS with assertions from other data sources into a set of CSV files that can be imported into neo4j to build a Unified Biomedical Knowledge Graph (UBKG)

    Python 5

  3. data-ingest-board data-ingest-board Public

    The UI App for HuBMAP and Sennet Data Publishing Dashboard

    JavaScript 1

  4. hra-api hra-api Public

    HRA-API: Human Reference Atlas API

    Jupyter Notebook

  5. hra-pop hra-pop Public

    HRApop

    JavaScript 1

  6. hs-ontology-api hs-ontology-api Public

    Ontology API built on top of the UBKG API and shared by HuBMAP and SenNet projects

    Python 2

Repositories

Showing 10 of 33 repositories
  • data-sankey Public

    Reusable component for displaying consortium data visualization

    x-atlas-consortia/data-sankey’s past year of commit activity
    JavaScript 0 GPL-3.0 0 0 0 Updated Apr 4, 2025
  • donor-metadata Public

    Application used to prepare de-identified and encoded donor metadata to include with tissue samples registered with HuBMAP or SenNet

    x-atlas-consortia/donor-metadata’s past year of commit activity
    Python 0 MIT 0 3 0 Updated Apr 4, 2025
  • data-ingest-board Public

    The UI App for HuBMAP and Sennet Data Publishing Dashboard

    x-atlas-consortia/data-ingest-board’s past year of commit activity
    JavaScript 1 MIT 0 19 1 Updated Apr 4, 2025
  • data-submission-guide Public

    A documentation site for the Data Submission Guide used by both HuBMAP and SenNet

    x-atlas-consortia/data-submission-guide’s past year of commit activity
    1 0 3 0 Updated Apr 4, 2025
  • commons Public

    The common code supporting the web services in the consortia

    x-atlas-consortia/commons’s past year of commit activity
    Python 0 0 0 0 Updated Apr 4, 2025
  • ubkg-neo4j Public

    A container implementation to serve the Unified Biomedical Knowledge Graph in Neo4j

    x-atlas-consortia/ubkg-neo4j’s past year of commit activity
    Shell 1 MIT 0 6 1 Updated Apr 4, 2025
  • hra-dashboard-data Public

    Gathers data for the HRA Dashboard

    x-atlas-consortia/hra-dashboard-data’s past year of commit activity
    HTML 1 MIT 1 6 0 Updated Apr 4, 2025
  • data-distillery-api Public

    the Data Distillery API

    x-atlas-consortia/data-distillery-api’s past year of commit activity
    Shell 0 0 0 0 Updated Apr 3, 2025
  • ubkg-api Public

    A web service for the Unified Biomedical Knowlege Graph system

    x-atlas-consortia/ubkg-api’s past year of commit activity
    Python 2 MIT 0 5 1 Updated Apr 3, 2025
  • hra-apps Public

    hra-apps: Applications using the Human Reference Atlas website

    x-atlas-consortia/hra-apps’s past year of commit activity
    HTML 0 MIT 0 8 0 Updated Apr 3, 2025
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