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A Spring/Angular application for analyzing bioinformatics data. Supports NGS sequence processing, job submission, and result storage with integration for HPC

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Ivarz/BioinfoPortal

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Setup the demo version

  1. launch mock services (needs podman to run):
bash launch_mock_services.sh
  1. build backend (needs java 22):
cd backend/BioinformaticsPortal && ./mvnw clean install && java -jar target/BioinformaticsPortal-0.0.1-SNAPSHOT.jar
  1. build frontend (needs npm and ng):
cd frontend && npm install && ng serve
  1. Open in browser http://localhost:8081 for keycloak. Username and password: admin.

  2. Create new realm from keycloak/realm-export.demo.json file.

  3. In the generated realm create new user with password and add it to portal-admin group.

  4. Open in browser http://localhost:4200. You will be redirected to keycloak. Enter the credentials of the created user.

  5. You should be logged in the portal and see the following page:

portal

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A Spring/Angular application for analyzing bioinformatics data. Supports NGS sequence processing, job submission, and result storage with integration for HPC

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