o Remove unnecessary changes #26
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| name: Source Bruteforce GraphDRP CSA workflow | |
| on: [push] | |
| jobs: | |
| test: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Install and check | |
| run: | | |
| pip install -e . | |
| export PYTHONPATH=$PYTHONPATH:. | |
| cd tests | |
| git clone https://github.com/JDACS4C-IMPROVE/GraphDRP.git | |
| cd GraphDRP | |
| conda env create -f conda_env.yml | |
| eval "$(conda shell.bash hook)" # Ensure Conda is properly initialized | |
| conda activate graphdrp | |
| source setup_improve.sh | |
| wget --cut-dirs=8 -P ./ -nH -np -m https://web.cels.anl.gov/projects/IMPROVE_FTP/candle/public/improve/benchmarks/single_drug_drp/benchmark-data-pilot1/csa_data/ || { echo 'Download failed'; exit 1; } | |
| python graphdrp_preprocess_improve.py --input_dir ./csa_data/raw_data --output_dir exp_result | |
| python graphdrp_train_improve.py --input_dir exp_result --output_dir exp_result | |
| python graphdrp_infer_improve.py --input_data_dir exp_result --input_model_dir exp_result --output_dir exp_result --calc_infer_score true | |
| ls -ltrh | |
| cd .. | |
| ls -ltrh | |
| tree . | |
| python csa_test.py |