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MouseLand

collaborative analysis of neural recordings

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  1. cellpose cellpose Public

    a generalist algorithm for cellular segmentation with human-in-the-loop capabilities

    Jupyter Notebook 1.5k 432

  2. Kilosort Kilosort Public

    Fast spike sorting with drift correction

    Python 506 259

  3. suite2p suite2p Public

    cell detection in calcium imaging recordings

    Jupyter Notebook 372 248

  4. rastermap rastermap Public

    a visualization method for neural data

    Python 210 49

  5. facemap facemap Public

    Framework for predicting neural activity from mouse orofacial movements tracked using a pose estimation model. Package also includes singular value decomposition (SVD) of behavioral videos.

    Python 164 63

  6. stringer-pachitariu-et-al-2018b stringer-pachitariu-et-al-2018b Public

    Responses of 10,000 neurons to 2,800 natural images

    MATLAB 68 21

Repositories

Showing 10 of 21 repositories
  • Kilosort Public

    Fast spike sorting with drift correction

    MouseLand/Kilosort’s past year of commit activity
    Python 506 GPL-3.0 259 27 2 Updated Mar 5, 2025
  • critical_init Public

    code for Pachitariu et al 2025

    MouseLand/critical_init’s past year of commit activity
    Jupyter Notebook 0 GPL-3.0 0 0 0 Updated Feb 28, 2025
  • MouseLand.github.io Public

    website for Pachitariu-Stringer lab

    MouseLand/MouseLand.github.io’s past year of commit activity
    CSS 0 0 0 0 Updated Feb 27, 2025
  • cellpose Public

    a generalist algorithm for cellular segmentation with human-in-the-loop capabilities

    MouseLand/cellpose’s past year of commit activity
    Jupyter Notebook 1,519 BSD-3-Clause 432 38 (2 issues need help) 11 Updated Feb 23, 2025
  • suite2p Public

    cell detection in calcium imaging recordings

    MouseLand/suite2p’s past year of commit activity
    Jupyter Notebook 372 GPL-3.0 248 109 (1 issue needs help) 12 Updated Jan 2, 2025
  • facemap Public

    Framework for predicting neural activity from mouse orofacial movements tracked using a pose estimation model. Package also includes singular value decomposition (SVD) of behavioral videos.

    MouseLand/facemap’s past year of commit activity
    Python 164 GPL-3.0 63 12 1 Updated Dec 5, 2024
  • cellpose-napari Public

    napari plugin for cellpose (see www.cellpose.org) - an anatomical segmentation tool

    MouseLand/cellpose-napari’s past year of commit activity
    Python 52 BSD-3-Clause 24 10 2 Updated Oct 27, 2024
  • rastermap Public

    a visualization method for neural data

    MouseLand/rastermap’s past year of commit activity
    Python 210 GPL-3.0 49 5 0 Updated Oct 19, 2024
  • course-materials Public
    MouseLand/course-materials’s past year of commit activity
    Jupyter Notebook 3 GPL-3.0 1 0 0 Updated Aug 27, 2024
  • stringer-pachitariu-et-al-2018a Public

    Recordings of 10k neurons during spontaneous behaviors

    MouseLand/stringer-pachitariu-et-al-2018a’s past year of commit activity
    MATLAB 50 15 2 2 Updated Mar 22, 2024
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