Feat/t2s paper download agent #171
Workflow file for this run
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| name: Docker Build and Push | |
| on: | |
| # Trigger after RELEASE workflow completes | |
| workflow_run: | |
| workflows: ["RELEASE"] | |
| types: | |
| - completed | |
| branches: | |
| - main | |
| # Keep existing triggers for flexibility | |
| push: | |
| branches: | |
| - main | |
| pull_request: | |
| branches: | |
| - main | |
| workflow_dispatch: | |
| jobs: | |
| # Detect which modules have changed | |
| changes: | |
| runs-on: ubuntu-latest | |
| outputs: | |
| talk2biomodels: ${{ steps.filter.outputs.talk2biomodels }} | |
| talk2scholars: ${{ steps.filter.outputs.talk2scholars }} | |
| talk2aiagents4pharma: ${{ steps.filter.outputs.talk2aiagents4pharma }} | |
| talk2knowledgegraphs: ${{ steps.filter.outputs.talk2knowledgegraphs }} | |
| steps: | |
| - name: Checkout Repository | |
| uses: actions/checkout@v4 | |
| with: | |
| fetch-depth: 0 | |
| - name: Check for changes | |
| uses: dorny/paths-filter@v2 | |
| id: filter | |
| with: | |
| filters: | | |
| talk2biomodels: | |
| - 'aiagents4pharma/talk2biomodels/**' | |
| talk2scholars: | |
| - 'aiagents4pharma/talk2scholars/**' | |
| talk2aiagents4pharma: | |
| - 'aiagents4pharma/talk2aiagents4pharma/**' | |
| talk2knowledgegraphs: | |
| - 'aiagents4pharma/talk2knowledgegraphs/**' | |
| # Generate version for the build | |
| version: | |
| runs-on: ubuntu-latest | |
| outputs: | |
| version: ${{ steps.get_version.outputs.version }} | |
| short_sha: ${{ steps.get_short_sha.outputs.short_sha }} | |
| steps: | |
| - name: Checkout Repository | |
| uses: actions/checkout@v4 | |
| with: | |
| fetch-depth: 0 | |
| # Get the latest version from git tags | |
| - name: Get latest version tag | |
| id: get_version | |
| run: | | |
| # Get the latest tag from git | |
| LATEST_TAG=$(git describe --tags --abbrev=0 2>/dev/null || echo "v0.1.0") | |
| # For workflow_run triggered from RELEASE workflow, use the tag as is | |
| if [[ "${{ github.event_name }}" == "workflow_run" ]]; then | |
| VERSION=$LATEST_TAG | |
| else | |
| # For other triggers (PR, push, etc.), create a development version | |
| # Strip the 'v' prefix | |
| VERSION=${LATEST_TAG#v} | |
| # Get count of commits since latest tag | |
| COMMIT_COUNT=$(git rev-list ${LATEST_TAG}..HEAD --count) | |
| # Create dev version: latest tag + dev + commit count | |
| VERSION="v${VERSION}-dev.${COMMIT_COUNT}" | |
| fi | |
| echo "Using version: $VERSION" | |
| echo "version=$VERSION" >> $GITHUB_OUTPUT | |
| # Get short SHA for tagging | |
| - name: Get short SHA | |
| id: get_short_sha | |
| run: | | |
| SHORT_SHA=$(git rev-parse --short HEAD) | |
| echo "short_sha=$SHORT_SHA" >> $GITHUB_OUTPUT | |
| # Separate job for talk2aiagents4pharma | |
| build-talk2aiagents4pharma: | |
| needs: [changes, version] | |
| if: ${{ needs.changes.outputs.talk2aiagents4pharma == 'true' }} | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Checkout Repository | |
| uses: actions/checkout@v4 | |
| - name: Login to Docker Hub | |
| uses: docker/login-action@v3 | |
| with: | |
| username: ${{ vars.DOCKERHUB_USERNAME }} | |
| password: ${{ secrets.DOCKERHUB_TOKEN }} | |
| - name: Build and Push Docker Image | |
| uses: docker/build-push-action@v6 | |
| with: | |
| file: aiagents4pharma/talk2aiagents4pharma/Dockerfile | |
| push: true | |
| tags: | | |
| virtualpatientengine/talk2aiagents4pharma:${{ needs.version.outputs.version }} | |
| virtualpatientengine/talk2aiagents4pharma:${{ needs.version.outputs.short_sha }} | |
| virtualpatientengine/talk2aiagents4pharma:latest | |
| # Separate job for talk2biomodels | |
| build-talk2biomodels: | |
| needs: [changes, version] | |
| if: ${{ needs.changes.outputs.talk2biomodels == 'true' }} | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Checkout Repository | |
| uses: actions/checkout@v4 | |
| - name: Login to Docker Hub | |
| uses: docker/login-action@v3 | |
| with: | |
| username: ${{ vars.DOCKERHUB_USERNAME }} | |
| password: ${{ secrets.DOCKERHUB_TOKEN }} | |
| - name: Build and Push Docker Image | |
| uses: docker/build-push-action@v6 | |
| with: | |
| file: aiagents4pharma/talk2biomodels/Dockerfile | |
| push: true | |
| tags: | | |
| virtualpatientengine/talk2biomodels:${{ needs.version.outputs.version }} | |
| virtualpatientengine/talk2biomodels:${{ needs.version.outputs.short_sha }} | |
| virtualpatientengine/talk2biomodels:latest | |
| # Separate job for talk2scholars | |
| build-talk2scholars: | |
| needs: [changes, version] | |
| if: ${{ needs.changes.outputs.talk2scholars == 'true' }} | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Checkout Repository | |
| uses: actions/checkout@v4 | |
| - name: Login to Docker Hub | |
| uses: docker/login-action@v3 | |
| with: | |
| username: ${{ vars.DOCKERHUB_USERNAME }} | |
| password: ${{ secrets.DOCKERHUB_TOKEN }} | |
| - name: Build and Push Docker Image | |
| uses: docker/build-push-action@v6 | |
| with: | |
| file: aiagents4pharma/talk2scholars/Dockerfile | |
| push: true | |
| tags: | | |
| virtualpatientengine/talk2scholars:${{ needs.version.outputs.version }} | |
| virtualpatientengine/talk2scholars:${{ needs.version.outputs.short_sha }} | |
| virtualpatientengine/talk2scholars:latest | |
| # Separate job for talk2knowledgegraphs | |
| build-talk2knowledgegraphs: | |
| needs: [changes, version] | |
| if: ${{ needs.changes.outputs.talk2knowledgegraphs == 'true' }} | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Checkout Repository | |
| uses: actions/checkout@v4 | |
| - name: Login to Docker Hub | |
| uses: docker/login-action@v3 | |
| with: | |
| username: ${{ vars.DOCKERHUB_USERNAME }} | |
| password: ${{ secrets.DOCKERHUB_TOKEN }} | |
| - name: Build and Push Docker Image | |
| uses: docker/build-push-action@v6 | |
| with: | |
| file: aiagents4pharma/talk2knowledgegraphs/Dockerfile | |
| push: true | |
| tags: | | |
| virtualpatientengine/talk2knowledgegraphs:${{ needs.version.outputs.version }} | |
| virtualpatientengine/talk2knowledgegraphs:${{ needs.version.outputs.short_sha }} | |
| virtualpatientengine/talk2knowledgegraphs:latest |