Transfer over text embeddings workflows Talk2KnowledgeGraphs #33

dmccloskey · 2024-12-05T08:15:46Z

Description

We would like to move our pipeline for generating textual embeddings for knowledge graph node and edge features to AIAgents4Pharma.

Pre-requisite Example biomedical knowledge graph for training and benchmarking #32
Utilities for working with NetworkX graphs and Pytorch geometric heterogenous data objects
Functions for embedding NetworkX graphs with textual feature descriptions

Transfer of unit tests and docs for utility functions
Adaptation of Jupyter notebooks to demonstrate how to embed textual descriptions coming from PrimeKG
Successful PR

github-actions · 2025-01-14T19:04:07Z

🎉 This issue has been resolved in version 1.6.0 🎉

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dmccloskey added the enhancement New feature or request label Dec 5, 2024

dmccloskey added this to the Talk2KnowledgeGraphs release v1.0.0 milestone Dec 5, 2024

dmccloskey assigned awmulyadi Dec 5, 2024

dmccloskey changed the title ~~Transfer over text embeddings workflows~~ Transfer over text embeddings workflows Talk2KnowledgeGraphs Dec 5, 2024

awmulyadi mentioned this issue Jan 13, 2025

feat: embeddings #58

Merged

19 tasks

awmulyadi closed this as completed in #58 Jan 14, 2025

github-actions bot added the released label Jan 14, 2025