Add single cell sample images module #10
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* finish download module changes * download notebook * rerun split data module * rerun download module * rerun train_model * rerun evaluation module * rerun interpretation module * combine datasets * combine datasets * split changes * update format * format update * format * finish split data * combine datasets, remove holdout * formatting * rerun pipelines * remove folded class * rerun pipeline * Update utils/download_utils.py Co-authored-by: Dave Bunten <ekgto445@gmail.com> * PR fixes * module docstrings Co-authored-by: Dave Bunten <ekgto445@gmail.com>
…enotypic_profiling_model into add-single-cell-validation
d33bs
approved these changes
Feb 10, 2023
Co-authored-by: Dave Bunten <ekgto445@gmail.com>
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This is ready for review!
This PR is the start of the single cell sample images module, which should provide a quick example of the model in action to new visitors. In correct_15_images.ipynb, we show 15 sample single cell images that the final model from 2.train_model correctly classifies.
Three single cell images from each of the 5 top performing classes (as determined by F1 score) are displayed and their paths are saved.
Note: Sample image files will be uploaded at the end of the PR, as including them here will make the review more difficult.
Sorry it is so large :(