This repository contains the code used in the TCGA LIHC eQTL project.
Author: Heini Natri (heini.natri@asu.edu)
- WES and RNAseq alignment using HISAT2
- RNAseq gene expression quantification using featureCounts
- Variant calling using GATK HaplotypeCaller
- eQTL mapping using QTLtools