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abcsFrederick

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  1. NGS_Preprocessing_Pipeline NGS_Preprocessing_Pipeline Public

    NGS Pipelines for Preprocessing RNA-seq, Whole Genome Sequencing and Exome-seq, and miRNA-Seq Data

    Python 10 2

  2. non-B_gfa non-B_gfa Public

    Identify non-B forming motifs

    C 8 7

  3. NGS_SV_CNV_Pipelines NGS_SV_CNV_Pipelines Public

    Genome Structural Variants Detection and Annotation Pipelines. Functions include NGS data QC, both germline and somatic SVs and CNVs detections, SVs and CNVs annotation and visualization.

    Python 6 1

  4. scRNA_pipeline scRNA_pipeline Public

    Single Cell RNA-seq Analysis Pipeline

    R 4

  5. Intro-to-R-Fall2020 Intro-to-R-Fall2020 Public

    R for Reproducible Scientific Analysis

    R 3

  6. Pipeliner Pipeliner Public

    Forked from DLWheeler/Pipeliner

    Pipeliner Program

    Ragel 1 1

Repositories

Showing 10 of 87 repositories
  • XAVIER Public Forked from CCBR/XAVIER

    An easy-to-use, flexible variant calling pipeline for use on the Biowulf cluster at NIH

    abcsFrederick/XAVIER’s past year of commit activity
    Python 0 MIT 3 0 0 Updated Mar 6, 2025
  • abcsFrederick.github.io Public

    This is the repo for the official abcsFrederick IO webpage.

    abcsFrederick/abcsFrederick.github.io’s past year of commit activity
    0 0 0 0 Updated Mar 5, 2025
  • CHAMPAGNE Public Forked from CCBR/CHAMPAGNE

    CHromAtin iMmuno PrecipitAtion sequencinG aNalysis pipEline

    abcsFrederick/CHAMPAGNE’s past year of commit activity
    Nextflow 0 MIT 2 0 0 Updated Mar 4, 2025
  • CARLISLE Public Forked from CCBR/CARLISLE

    Cut And Run Analysis Pipeline

    abcsFrederick/CARLISLE’s past year of commit activity
    Python 0 MIT 4 0 0 Updated Feb 28, 2025
  • abcsFrederick/ABCS-pydicom-split’s past year of commit activity
    Python 1 MIT 0 0 0 Updated Feb 25, 2025
  • LOGAN Public Forked from CCBR/LOGAN
    abcsFrederick/LOGAN’s past year of commit activity
    Nextflow 0 MIT 4 0 0 Updated Feb 22, 2025
  • abcsFrederick/Oncogenomics_NF_WF’s past year of commit activity
    Nextflow 0 0 0 0 Updated Feb 19, 2025
  • l2p Public Forked from CCBR/l2p

    List to pathway, or l2p, is an R package for gene set enrichment analysis that is optimized for speed.

    abcsFrederick/l2p’s past year of commit activity
    C 0 MIT 2 0 0 Updated Feb 12, 2025
  • ASPEN Public

    CCBR pipeline for preliminary QC and peak calling from ATACseq datasets

    abcsFrederick/ASPEN’s past year of commit activity
    Shell 0 MIT 1 0 0 Updated Feb 11, 2025
  • spacesavers2 Public Forked from CCBR/spacesavers2
    abcsFrederick/spacesavers2’s past year of commit activity
    Python 0 1 0 0 Updated Jan 21, 2025

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