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Standalone cli fix #61

Merged
merged 14 commits into from
Jul 22, 2019
Merged

Standalone cli fix #61

merged 14 commits into from
Jul 22, 2019

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mortonjt
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This continues from #58 and addresses #60

This PR does a few things

  • Outputs embedding parameters in a readable format in standalone cli
  • Makes sure that the ordination is properly centered
  • Removes cross-validation at the end (so that it won't hang)

Feel free to test this out. This branch can be installed via

pip install git+https://github.com/mortonjt/rhapsody.git@standalone-cli-fix

@mortonjt
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Ok, @afvrbanac just did a quick test of rhapsody on her machine. Merging this in. Thanks!

@mortonjt mortonjt merged commit 83df063 into biocore:master Jul 22, 2019
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