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@ebi-gene-expression-group

EBI Gene Expression Group

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  1. anatomogram anatomogram Public

    Anatomogram illustrating Expression Atlas experiments

    JavaScript 42 21

  2. scanpy-scripts scanpy-scripts Public

    Scripts for using scanpy

    Python 35 13

  3. atlas atlas Public archive

    Expression Atlas

    Java 26 5

  4. r-seurat-scripts r-seurat-scripts Public

    Scripts to install as a Bioconda package for making workflows

    R 18 4

  5. container-galaxy-sc-tertiary container-galaxy-sc-tertiary Public

    Galaxy container for single cell RNA-Seq tertiary analysis tools

    Python 17 14

  6. scxa-workflows scxa-workflows Public

    Higher level repo for aggregating all of Atlas workflow logic for Single Cell

    Shell 14 2

Repositories

Showing 10 of 186 repositories
  • atlas-experiment-fetcher Public

    Fetches and formats GXA experiment data into structured YAML

    ebi-gene-expression-group/atlas-experiment-fetcher’s past year of commit activity
    Python 0 0 1 1 Updated Mar 11, 2025
  • atlas-bash-util Public
    ebi-gene-expression-group/atlas-bash-util’s past year of commit activity
    Shell 0 0 2 2 Updated Mar 11, 2025
  • atlas-components Public

    Front end components of Expression Atlas and Single Cell Expression Atlas

    ebi-gene-expression-group/atlas-components’s past year of commit activity
    JavaScript 3 3 13 3 Updated Mar 11, 2025
  • atlas-web-bulk Public

    Bulk Expression Atlas web application

    ebi-gene-expression-group/atlas-web-bulk’s past year of commit activity
    Java 0 Apache-2.0 1 47 6 Updated Mar 11, 2025
  • bioconductor-ArrayExpress Public

    ArrayExpress bioconductor R package for raw and pheno data retrieval.

    ebi-gene-expression-group/bioconductor-ArrayExpress’s past year of commit activity
    R 2 2 1 0 Updated Mar 10, 2025
  • scxa-tertiary-workflow Public

    Tertiary component for SCXA workflows

    ebi-gene-expression-group/scxa-tertiary-workflow’s past year of commit activity
    Nextflow 1 0 7 (1 issue needs help) 1 Updated Mar 6, 2025
  • bioconductor-ExpressionAtlas Public

    Download datasets from EMBL-EBI Expression Atlas

    ebi-gene-expression-group/bioconductor-ExpressionAtlas’s past year of commit activity
    R 0 1 1 1 Updated Mar 5, 2025
  • organ-anatomogram Public
    ebi-gene-expression-group/organ-anatomogram’s past year of commit activity
    JavaScript 1 0 3 13 Updated Mar 4, 2025
  • scxa-workflows Public

    Higher level repo for aggregating all of Atlas workflow logic for Single Cell

    ebi-gene-expression-group/scxa-workflows’s past year of commit activity
    Shell 14 Apache-2.0 2 6 1 Updated Feb 28, 2025
  • scxa-bundle-workflow Public

    Workflow for making bundles for Single-cell Expression Atlas

    ebi-gene-expression-group/scxa-bundle-workflow’s past year of commit activity
    Nextflow 0 0 1 0 Updated Feb 28, 2025
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