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@funkelab

Funke lab

Janelia Research Campus

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  1. gunpowder gunpowder Public

    A library to facilitate machine learning on multi-dimensional images.

    Python 81 57

  2. lsd lsd Public

    🌈

    Python 54 34

  3. daisy daisy Public

    Block-wise task scheduling for large nD volumes.

    Python 29 18

  4. motile motile Public

    Multi-Object Tracker using Integer Linear Equations

    Python 29 5

  5. cellulus cellulus Public

    Unsupervised Instance Segmentation in Microscopy

    Python 21 2

  6. linajea linajea Public

    Python 17 7

Repositories

Showing 10 of 74 repositories
  • quac Public

    Quantitative Attributions with Counterfactuals

    funkelab/quac’s past year of commit activity
    Python 2 MIT 0 16 0 Updated Mar 5, 2025
  • drosophila_neurotransmitters Public

    Neurotransmitter ground truth

    funkelab/drosophila_neurotransmitters’s past year of commit activity
    TeX 1 0 3 0 Updated Mar 5, 2025
  • blinx_paper Public

    blinx paper

    funkelab/blinx_paper’s past year of commit activity
    TeX 0 1 0 0 Updated Mar 4, 2025
  • witty Public

    A "well-in-time" compiler for python: use cython to compile pyx modules at runtime.

    funkelab/witty’s past year of commit activity
    Python 3 MIT 1 0 1 Updated Mar 3, 2025
  • motile Public

    Multi-Object Tracker using Integer Linear Equations

    funkelab/motile’s past year of commit activity
    Python 29 MIT 5 18 4 Updated Mar 3, 2025
  • motile_tracker Public

    An application for interactive for tracking with motile

    funkelab/motile_tracker’s past year of commit activity
    Python 7 BSD-3-Clause 4 50 0 Updated Mar 3, 2025
  • synister Public

    Neurotransmitter prediction from EM.

    funkelab/synister’s past year of commit activity
    Python 10 5 3 1 Updated Feb 28, 2025
  • finn Public

    finn is (not) napari

    funkelab/finn’s past year of commit activity
    Python 1 BSD-3-Clause 0 10 0 Updated Feb 27, 2025
  • motile_toolbox Public

    A toolbox for tracking with motile, including constructing candidate graphs and computing common features.

    funkelab/motile_toolbox’s past year of commit activity
    Python 4 1 2 3 Updated Feb 25, 2025
  • funlib.learn.torch Public

    Pytorch Models

    funkelab/funlib.learn.torch’s past year of commit activity
    Python 6 12 2 6 Updated Feb 20, 2025
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