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add tqdm progress bar to embedding creation step. #43

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merged 14 commits into from
Dec 3, 2020

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@florian-huber florian-huber commented Nov 27, 2020

  • fix conda workflow (analog to matchms)
  • add tqdm progress bar to embedding calculation in Spec2Vec (optional, default is off)

@florian-huber florian-huber marked this pull request as ready for review November 27, 2020 11:18
@florian-huber florian-huber linked an issue Nov 27, 2020 that may be closed by this pull request
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Seeing progress bar in tests

pytest --capture no -v tests/test_spec2vec.py 
...
100%|████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████| 2/2 [00:00<00:00, 7294.44it/s]
100%|████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████| 2/2 [00:00<00:00, 8839.42it/s]
...

Good to know that setup-miniconda action moved.

Now if one is slow I dont know which set of spectrums it is working on. Please distinguish both progressbars with a description.

florian-huber and others added 3 commits December 3, 2020 16:19
Co-authored-by: Stefan Verhoeven <s.verhoeven@esciencecenter.nl>
Co-authored-by: Stefan Verhoeven <s.verhoeven@esciencecenter.nl>
Co-authored-by: Stefan Verhoeven <s.verhoeven@esciencecenter.nl>
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sonarqubecloud bot commented Dec 3, 2020

Kudos, SonarCloud Quality Gate passed!

Bug A 0 Bugs
Vulnerability A 0 Vulnerabilities
Security Hotspot A 0 Security Hotspots
Code Smell A 0 Code Smells

100.0% 100.0% Coverage
0.0% 0.0% Duplication

@florian-huber
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Thanks a lot for reviewing Stefan!

@florian-huber florian-huber merged commit 24ad629 into master Dec 3, 2020
@florian-huber florian-huber deleted the add_progress_bar branch December 3, 2020 15:39
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Add progress bar for spec2vec.matrix() calculation
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