Add conmat to daedalus_ode docs, mark files autogen

jameel-institute · Jan 31, 2025 · 5429954 · 5429954
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commit 5429954
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Showing 4 changed files with 10 additions and 7 deletions.
diff --git a/.gitattributes b/.gitattributes
@@ -1,2 +1,5 @@
 README.md linguist-generated=true
 man/*.Rd linguist-generated=true
+R/dust.R linguist-generated=true
+src/daedalus.cpp linguist-generated=true
+src/cpp11.cpp linguist-generated=true
diff --git a/R/dust.R b/R/dust.R
diff --git a/inst/dust/daedalus.cpp b/inst/dust/daedalus.cpp
@@ -30,6 +30,7 @@ const int N_COMPARTMENTS = N_EPI_COMPARTMENTS + N_DATA_COMPARTMENTS;
 // [[dust2::parameter(sigma, constant = FALSE)]]
 // [[dust2::parameter(gamma, constant = FALSE)]]
 // [[dust2::parameter(n_strata, constant = FALSE, type = "int")]]
+// [[dust2::parameter(conmat, constant = TRUE)]]
 class daedalus_ode {
  public:
   daedalus_ode() = delete;
@@ -100,7 +101,6 @@ class daedalus_ode {
     shared.sigma = dust2::r::read_real(pars, "sigma", shared.sigma);
     shared.gamma = dust2::r::read_real(pars, "gamma", shared.gamma);
     shared.n_strata = dust2::r::read_int(pars, "n_strata", shared.n_strata);
-    // TODO(pratik): add conmat update method?
   }
 
   /// @brief Set initial values of the IVP model.

diff --git a/src/daedalus.cpp b/src/daedalus.cpp