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@korsunskylab

Korsunsky Lab

Computational biology lab at Brigham and Women's Hospital and Harvard Medical School.

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  1. rcna rcna Public

    R implementation of the Reshef and Rumker CNA method (https://github.com/immunogenomics/cna)

    R 14 5

  2. tessera tessera Public

    Jupyter Notebook 12 2

  3. spatula spatula Public

    Set of useful functions for handling spatial genomics data

    Jupyter Notebook 5 1

  4. baysorrr baysorrr Public

    R wrapper to Julia Baysor package, optimized for running on large datasets

    R 2 2

  5. presto presto Public

    ❗ This is a read-only mirror of the original presto R package repository housed at github.com/immunogenomics/presto

    R 1

  6. nsclc_manuscript_2023 nsclc_manuscript_2023 Public

    Code used in the analysis of "Human lung cancer harbors spatially-organized stem-immunity hubs associated with response to immunotherapy" Chen et al Nature Immunology 2024

    Jupyter Notebook 1 2

Repositories

Showing 10 of 13 repositories
  • tessera Public
    Jupyter Notebook 12 2 4 0 Updated Mar 6, 2025
  • clusterutils Public

    Sets of functions useful for clustering, mostly with modularity optimization

    0 GPL-3.0 0 0 0 Updated Dec 9, 2024
  • nsclc_manuscript_2023 Public

    Code used in the analysis of "Human lung cancer harbors spatially-organized stem-immunity hubs associated with response to immunotherapy" Chen et al Nature Immunology 2024

    Jupyter Notebook 1 2 0 0 Updated Feb 14, 2024
  • baysorrr Public

    R wrapper to Julia Baysor package, optimized for running on large datasets

    R 2 2 0 1 Updated Dec 22, 2023
  • rcna Public

    R implementation of the Reshef and Rumker CNA method (https://github.com/immunogenomics/cna)

    R 14 5 5 0 Updated Aug 24, 2023
  • spatula Public

    Set of useful functions for handling spatial genomics data

    Jupyter Notebook 5 1 0 0 Updated Aug 4, 2023
  • BestPractices Public

    This is a collection of notebooks, tutorials, and notes on best practices within the lab for single cell and spatial genomics analysis.

    0 GPL-3.0 0 0 0 Updated May 28, 2023
  • SynovialImageProcessing Public
    0 0 0 0 Updated Feb 14, 2022
  • labdocs Public

    Documents relevant to lab functions

    0 0 0 0 Updated Dec 17, 2021
  • presto Public

    ❗ This is a read-only mirror of the original presto R package repository housed at github.com/immunogenomics/presto

    R 1 0 0 0 Updated Jul 28, 2021
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