Repositories list

• IMPROVE

  Public
  Libraries and scripts for basic IMPROVE functionalities

  Python

  •

  MIT License

  •3•1•31•2•Updated Mar 12, 2025Mar 12, 2025

• matchmaker

  Public
  Initial Commit

  synergy

  Python

  •

  MIT License

  •9•0•0•0•Updated Mar 5, 2025Mar 5, 2025

• docs

  Public
  Python

  •

  MIT License

  •3•3•5•1•Updated Mar 3, 2025Mar 3, 2025

• PRODeepSyn

  Public
  Source code of PRODeepSyn

  synergy

  Python

  •5•0•0•0•Updated Feb 13, 2025Feb 13, 2025

• MGAE-DC

  Public
  synergy

  Python

  •1•0•0•0•Updated Feb 12, 2025Feb 12, 2025

• GAECDS

  Public
  synergy

  Python

  •1•0•0•0•Updated Feb 12, 2025Feb 12, 2025

• GraphDRP

  Public
  single-drp

  Jupyter Notebook

  •

  Apache License 2.0

  •19•1•3•0•Updated Feb 10, 2025Feb 10, 2025

• DeepTTC

  Public
  DeepTTC: a transformer-based model for predicting cancer drug response

  single-drp

  Python

  •10•0•1•0•Updated Feb 6, 2025Feb 6, 2025

• DeepDDs

  Public
  synergy

  Python

  •17•0•0•0•Updated Jan 31, 2025Jan 31, 2025

• LGBM

  Public
  single-drp

  Python

  •

  Apache License 2.0

  •0•0•4•0•Updated Jan 22, 2025Jan 22, 2025

• Scratch

  Public
  Jupyter Notebook

  •0•0•0•0•Updated Jan 22, 2025Jan 22, 2025

• mae_poly_loss

  Public
  MAE polynomial loss functions

  Python

  •0•0•0•0•Updated Dec 20, 2024Dec 20, 2024

• UNO

  Public
  Standalone UNO repo for the IMPROVE project

  single-drp

  Python

  •1•0•2•2•Updated Dec 13, 2024Dec 13, 2024

• DeepCDR

  Public
  Cancer Drug Response Prediction via a Hybrid Graph Convolutional Network

  single-drp

  Python

  •

  MIT License

  •28•0•5•0•Updated Dec 10, 2024Dec 10, 2024

• PathDSP

  Public
  Explainable Drug Sensitivity Prediction through Cancer Pathway Enrichment Scores

  single-drp

  Python

  •

  MIT License

  •10•0•1•0•Updated Dec 9, 2024Dec 9, 2024

• tCNNS-Project

  Public
  twin CNN channels on drugs and cancer cell lines

  single-drp

  Python

  •9•0•1•0•Updated Nov 15, 2024Nov 15, 2024

• HiDRA

  Public
  HiDRA

  single-drp

  Python

  •

  GNU General Public License v3.0

  •4•0•1•1•Updated Nov 13, 2024Nov 13, 2024

• IGTD

  Public
  Image Generator for Tabular Data (IGTD): Converting Tabular Data to Images for Deep Learning Using Convolutional Neural Networks

  single-drp

  Python

  •

  MIT License

  •58•0•3•0•Updated Nov 1, 2024Nov 1, 2024

• DualGCN

  Public
  single-drp

  Python

  •

  MIT License

  •3•1•1•1•Updated Sep 11, 2024Sep 11, 2024

• Paccmann_MCA

  Public
  PyTorch implementation of bimodal neural networks for drug-cell (pharmarcogenomics) and drug-protein (proteochemometrics) interaction prediction

  single-drp

  Python

  •

  MIT License

  •18•1•2•0•Updated Sep 6, 2024Sep 6, 2024

• HPO

  Public
  Setup and configs for HPO runs

  Jupyter Notebook

  •0•1•0•1•Updated Sep 3, 2024Sep 3, 2024

• Sunspot

  Public
  Python

  •0•0•0•0•Updated Jul 26, 2024Jul 26, 2024

• Singularity

  Public
  Singularity definitions that can be extended to support execution of community models.

  Shell

  •

  MIT License

  •5•3•17•3•Updated Jul 2, 2024Jul 2, 2024

• DrugCell

  Public
  A visible neural network model for drug response prediction

  single-drp

  Jupyter Notebook

  •

  MIT License

  •55•0•3•1•Updated Jun 12, 2024Jun 12, 2024

• DeepSynergy

  Public
  synergy

  Jupyter Notebook

  •29•0•0•0•Updated Jun 3, 2024Jun 3, 2024

• SDCNet

  Public
  synergy

  Python

  •2•0•0•0•Updated May 31, 2024May 31, 2024

• TGSA

  Public
  PyTorch implementation of <<TGSA: Protein-Protein Association-Based Twin Graph Neural Networks for Drug Response Prediction with Similarity Augmentation>>

  single-drp

  Python

  •

  MIT License

  •17•0•1•0•Updated Apr 5, 2024Apr 5, 2024

• Benchmarks

  Public
  ECP-CANDLE Benchmarks

  Python

  •

  MIT License

  •83•0•2•1•Updated Mar 31, 2024Mar 31, 2024

• .github

  Public
  Public README for organization

  0•0•0•0•Updated Mar 18, 2024Mar 18, 2024

• BiG-DRP

  Public
  single-drp

  Python

  •3•0•1•1•Updated Feb 29, 2024Feb 29, 2024