Skip to content

@WEHI-SODA-Hub WEHI SODA Hub

Change the repository type filter

All

    Repositories list

    9 repositories

    • spatialVis

      Public
      R package for downstream plots and spatial analyses for MIBI
      R
      •0•0•0•0•Updated Mar 14, 2025Mar 14, 2025

    • RdfCrate

      Public
      Library for building RO-Crates using rdflib
      Python
      •
      MIT License
      •1•2•6•1•Updated Mar 13, 2025Mar 13, 2025

    • OmeroCrate

      Public
      Tools for uploading an RO-Crate dataset to Omero
      omeroro-crate
      Python
      •0•0•0•0•Updated Mar 12, 2025Mar 12, 2025

    • proclaim

      Public
      RO-Crate profile generator from LinkML
      Python
      •
      MIT License
      •1•0•5•0•Updated Feb 21, 2025Feb 21, 2025

    • spatialvpt

      Public
      Segmentation and QC workflow for MERSCOPE using vizgen-postprocessing tool
      qccell-segmentationmerscope
      Nextflow
      •
      MIT License
      •0•0•0•0•Updated Feb 20, 2025Feb 20, 2025

    • MibiSegmentation

      Public
      Python
      •0•0•0•0•Updated Feb 6, 2025Feb 6, 2025

    • ro-crate-py

      Public
      Python library for RO-Crate
      Jupyter Notebook
      •
      Apache License 2.0
      •31•0•0•0•Updated Feb 4, 2025Feb 4, 2025

    • cordful

      Public
      LinkML implementation of various linked data schemas, profiles vocabularies and ontologies
      Python
      •
      MIT License
      •0•0•0•0•Updated Jan 24, 2025Jan 24, 2025

    • vizgen-postprocessing_container

      Public
      Container for running vizgen-postprocessing tool with the cellpose2 plugin
      Dockerfile
      •
      Apache License 2.0
      •0•0•0•0•Updated Aug 26, 2024Aug 26, 2024