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@complextissue Complex Tissue lab

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    10 repositories

    • pytximport

      Public
      Feature-rich Python implementation of the tximport package for gene count estimation.
      pythonbioinformaticsrna-seqdeseq2rnatximportanndatascverse
      Python
      •
      GNU General Public License v3.0
      •1•34•0•0•Updated Feb 26, 2025Feb 26, 2025

    • decoupler-py

      Public
      Python package to perform enrichment analysis from omics data.
      Python
      •
      GNU General Public License v3.0
      •27•0•0•0•Updated Jan 28, 2025Jan 28, 2025

    • pasta

      Public
      Pattern Analysis of SpaTial omics datA
      TeX
      •1•0•0•0•Updated Dec 5, 2024Dec 5, 2024

    • easySCFr

      Public
      R
      •4•0•0•0•Updated Nov 27, 2024Nov 27, 2024

    • pyclustree

      Public
      A Python alternative to `clustree` for assessing single-cell RNA-sequencing clusters.
      single-cellscverseclustreepyclustree
      Python
      •
      GNU General Public License v3.0
      •0•4•0•0•Updated Nov 18, 2024Nov 18, 2024

    • PyDESeq2

      Public
      A Python implementation of the DESeq2 pipeline for bulk RNA-seq DEA.
      Python
      •
      MIT License
      •71•0•0•0•Updated Nov 5, 2024Nov 5, 2024

    • multiSPAETI

      Public
      Implementation of MULTISPATI-PCA in Python
      Python
      •
      MIT License
      •1•0•0•0•Updated Nov 1, 2024Nov 1, 2024

    • snakemake-bulk-rna-seq-workflow

      Public
      Snakemake workflow for bulk RNA sequencing with pytximport.
      Python
      •
      GNU General Public License v3.0
      •0•4•0•0•Updated Sep 30, 2024Sep 30, 2024

    • xpysom

      Public
      XPySom is a minimalistic implementation of batch Self Organizing Map algorithm
      Python
      •
      GNU General Public License v3.0
      •432•0•0•0•Updated Sep 20, 2023Sep 20, 2023

    • .github

      Public
      0•0•0•0•Updated Feb 2, 2023Feb 2, 2023