Repositories list

• omero-documentation

  Public
  Sphinx-based documentation for the Open Microscopy Environment

  documentationomeroome

  Python

  •

  BSD 2-Clause "Simplified" License

  •51•22•27•7•Updated Mar 14, 2025Mar 14, 2025

• omero-py

  Public
  Python project containing Ice remoting code for OMERO

  pythoncomponentlib+ 1omero

  Python

  •

  GNU General Public License v2.0

  •34•23•70•18•Updated Mar 14, 2025Mar 14, 2025

• upptime

  Public
  📈 Uptime monitor and status page for OME, powered by @upptime

  uptime-monitorstatus-pageupptime

  Markdown

  •

  MIT License

  •1•1•3•1•Updated Mar 14, 2025Mar 14, 2025

• omero-build

  Public
  OMERO top-level build for all components

  buildomerometa-repo

  Dockerfile

  •7•1•3•0•Updated Mar 13, 2025Mar 13, 2025

• openmicroscopy

  Public
  OME (Open Microscopy Environment) develops open-source software and data format standards for the storage and manipulation of biological light microscopy data. A joint project between universities, research establishments and industry in Europe and the USA, OME has over 20 active researchers with strong links to the microscopy community. Funded …

  pythonimagedatabase+ 3serveromerojava

  Java

  •

  GNU General Public License v2.0

  •102•208•25•8•Updated Mar 13, 2025Mar 13, 2025

• bio-formats-build

  Public
  Bio-Formats top-level build for all components

  buildbio-formatsmeta-repo

  Shell

  •10•0•1•5•Updated Mar 12, 2025Mar 12, 2025

• ome-zarr-py

  Public
  Implementation of next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.

  omezarrngff+ 1ome-zarr

  Python

  •

  Other

  •57•180•56•12•Updated Mar 12, 2025Mar 12, 2025

• bioformats

  Public
  Bio-Formats is a Java library for reading and writing data in life sciences image file formats. It is developed by the Open Microscopy Environment. Bio-Formats is released under the GNU General Public License (GPL); commercial licenses are available from Glencoe Software.

  javametadataimage+ 7format-readerformat-converterwhole-slide-imagingwsilightsheetbio-formatslife-sciences-image

  Java

  •

  GNU General Public License v2.0

  •247•389•198•10•Updated Mar 12, 2025Mar 12, 2025

• omero-web-docker

  Public
  OMERO.web production docker image

  omeroomeopenmicroscopy+ 2omero-webdocker

  Makefile

  •

  BSD 2-Clause "Simplified" License

  •20•6•12•8•Updated Mar 11, 2025Mar 11, 2025

• omero-gateway-java

  Public
  Gradle project containing OMERO Java Client Library

  javaapibuild+ 5sdkcomponentgradlejaromero

  Java

  •

  GNU General Public License v2.0

  •9•1•16•2•Updated Mar 11, 2025Mar 11, 2025

• omero-blitz

  Public
  Gradle project containing Ice remoting code for OMERO

  componentserverjar+ 2libomero

  Java

  •

  GNU General Public License v2.0

  •15•0•31•2•Updated Mar 11, 2025Mar 11, 2025

• omero-server

  Public
  Gradle project containing main server logic for OMERO

  componentserverjar+ 2libomero

  Java

  •

  GNU General Public License v2.0

  •14•5•39•4•Updated Mar 11, 2025Mar 11, 2025

• omero-renderer

  Public
  Gradle project containing rendering functionality for OMERO

  componentgradlejar+ 1omero

  Java

  •

  GNU General Public License v2.0

  •10•0•2•1•Updated Mar 11, 2025Mar 11, 2025

• omero-romio

  Public
  Gradle project for the ROMIO library of OMERO

  libraryjario+ 1omero

  Java

  •

  GNU General Public License v2.0

  •13•0•3•1•Updated Mar 11, 2025Mar 11, 2025

• omero-common

  Public
  Gradle project containing common utilities for OMERO

  libraryutilomero

  Java

  •

  GNU General Public License v2.0

  •11•1•1•4•Updated Mar 11, 2025Mar 11, 2025

• ome-common-java

  Public
  Java library providing common functionality for all OME Java components

  Java

  •

  Other

  •19•2•0•1•Updated Mar 11, 2025Mar 11, 2025

• omero-model

  Public
  Gradle project for generating model jar for OMERO

  librarycomponentgradle+ 3modeljaromero

  Java

  •

  GNU General Public License v2.0

  •13•0•9•0•Updated Mar 11, 2025Mar 11, 2025

• conda-bftools

  Public
  Bio-Formats command line tools

  Batchfile

  •4•2•1•0•Updated Mar 11, 2025Mar 11, 2025

• ome-contributing

  Public
  5•1•0•2•Updated Mar 10, 2025Mar 10, 2025

• omero-python-superbuild

  Public
  OMERO build for Python server components

  pythonbuildomero+ 1meta-repo

  4•0•1•0•Updated Mar 10, 2025Mar 10, 2025

• www.openmicroscopy.org

  Public
  OME main website

  jekyll-siteome

  HTML

  •

  Creative Commons Attribution 4.0 International

  •21•5•11•2•Updated Mar 10, 2025Mar 10, 2025

• omero-parade

  Public
  OMERO.web plugin for displaying Dataset thumbnails or Plates in webclient center panel

  webappomero

  JavaScript

  •

  GNU Affero General Public License v3.0

  •13•1•35•6•Updated Mar 8, 2025Mar 8, 2025

• bio-formats-documentation

  Public
  Bio-Formats documentation

  documentationbio-formats

  Java

  •

  BSD 2-Clause "Simplified" License

  •18•8•1•2•Updated Mar 7, 2025Mar 7, 2025

• omero-web

  Public
  Django-based OMERO.web client

  pythonclientdjango+ 2webomero

  Python

  •31•17•127•12•Updated Mar 7, 2025Mar 7, 2025

• ome-model

  Public
  OME model (specification, code generator, implementation)

  imageschemadata-model+ 3specificationcode-generationome-model

  XSLT

  •

  Other

  •28•14•10•0•Updated Mar 5, 2025Mar 5, 2025

• omero-install

  Public
  OMERO installation scripts

  installtoolome+ 1omero

  Shell

  •24•4•7•0•Updated Mar 5, 2025Mar 5, 2025

• bio-formats-fiji

  Public
  A simple POM to update Bio-Formats on a Fiji distribution

  fijibio-formats

  Shell

  •7•0•1•1•Updated Mar 5, 2025Mar 5, 2025

• bio-formats-examples

  Public
  Examples of usage of the Bio-Formats API

  apimavenexamples+ 2gradlebio-formats

  Java

  •

  Other

  •19•13•1•0•Updated Mar 5, 2025Mar 5, 2025

• omeroweb-install

  Public
  Jinja

  •10•2•4•2•Updated Mar 5, 2025Mar 5, 2025

• meeting-minutes

  Public
  Minutes from the weekly OME community meetings

  Creative Commons Attribution 4.0 International

  •6•0•1•0•Updated Mar 5, 2025Mar 5, 2025