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Integrate NIfTI MRS read/write/coreg implementaion #398

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merged 6 commits into from
Apr 27, 2022

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CWDAVIESJENKINS
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Updated io_writeniimrs to work with more general input data. This should now manage any 7D SVS data that uses Matlab MRS structure.

Fixed error in main loop of NIFTI write routine, and added a temporary seq label for NFITI data.

Fixed error in osp_processHERCULES concatenation of ref averages
Added voxel coregistration for Nii MRS. Currently working for Philips data but not Siemens. Main changes:

Added coreg_nifti.m which uses nii_tool to coregister voxel to structural.
Added nii_xform to lib - function used by nii_tool
updated OspreyCoreg to handle NIFTI
Modified osp_fitinitialise to throw warning if sequence type not detected
Modified osp_LoadNii to try and populate vendor/seq fields of MRSCont
Fixed bug in osp_plotSegment
Empty protocol name handling for NIfTI MRS, and bug fix in osp_combineCoils
@HJZollner HJZollner merged commit 012cde4 into schorschinho:develop Apr 27, 2022
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