fix ci

.github/workflows/build-test.yml

@@ -11,48 +11,48 @@ jobs:
       with:
         fetch-depth: 0
 
-    - name: Install latest stable rust
-      uses: actions-rs/toolchain@v1
-      with:
-         toolchain: stable
-         override: true
-         components: rustfmt, clippy
-
-    - name: Run cargo fmt
-      uses: actions-rs/cargo@v1
-      with:
-        command: fmt
-        args: --all -- --check
-
-    - name: cache rust
-      uses: Swatinem/rust-cache@v2
-
     - name: cache conda
       uses: actions/cache@v4
       env:
-        CACHE_NUMBER: 0
+        CACHE_NUMBER: 1
       with:
         path: ~/conda_pkgs_dir
         key:
           ${{ runner.os }}-conda-${{ env.CACHE_NUMBER }}-${{ hashFiles('environment.yml') }}
 
+    - name: cache rust
+      uses: Swatinem/rust-cache@v2
+
     - name: setup conda
-      uses: conda-incubator/setup-miniconda@a4260408e20b96e80095f42ff7f1a15b27dd94ca
+      uses: conda-incubator/setup-miniconda@v3
       with:
         auto-update-conda: true
-        python-version: 3.11
+        python-version: 3.12
         channels: conda-forge,bioconda
         miniforge-variant: Mambaforge
         miniforge-version: latest
         use-mamba: true
         mamba-version: "*"
         activate-environment: sourmash_dev
         auto-activate-base: false
-        use-only-tar-bz2: true
+#        use-only-tar-bz2: true
+
+    - run: conda info
+    - run: conda list
+    - run: conda config --show
+
+    - run: mamba search rust
 
     - name: install dependencies
       shell: bash -l {0}
-      run: mamba install git compilers maturin pytest
+      run: mamba install rust==1.75.0
+
+    - name: install dependencies 2
+      shell: bash -l {0}
+      run: mamba install compilers maturin pytest pandas
+
+    - name: Run cargo fmt
+      run: cargo fmt --all -- --check --verbose
 
     - name: build
       shell: bash -l {0}

Cargo.toml

@@ -27,9 +27,6 @@ tokio = { version = "1.37.0", features = ["full"] }
 regex = "1.10.4"
 openssl = { version = "0.10", features = ["vendored"] }
 
-[build-dependencies]
-pyo3-build-config = { version = "0.21.2", features = ["resolve-config"] }
-
 [profile.release]
 #target-cpu=native
 lto = "thin"

pyproject.toml

@@ -30,7 +30,6 @@ test = [
 
 [tool.maturin]
 python-source = "src/python"
-features = ["pyo3/extension-module"]
 
 [tool.maturin.target.x86_64-apple-darwin]
 macos-deployment-target = "10.14"