chore(deps): bump all deps

[SteveLauC]

Standards checklist:

• The PR title is descriptive.
• I have read CONTRIBUTING.md
• The code compiles (cargo build)
• The code passes rustfmt (cargo fmt)
• The code passes clippy (cargo clippy)
• The code passes tests (cargo test)
• Optional: I have tested the code myself

For new steps

• Optional: Topgrade skips this step where needed
• Optional: The --dry-run option works with this step
• Optional: The --yes option works with this step if it is supported by
  the underlying command

If you developed a feature or a bug fix for someone else and you do not have the
means to test it, please tag this person here.

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What does this PR do

1. bump all the dependencies
2. Remove the libc dependency, and fully switch to Nix on UNIX OSes