A PyTorch Basecaller for Oxford Nanopore Reads
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Jul 25, 2024 - Python
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basecalling
Here are 13 public repositories matching this topic...
Megalodon is a research command line tool to extract high accuracy modified base and sequence variant calls from raw nanopore reads by anchoring the information rich basecalling neural network output to a reference genome/transriptome.
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May 4, 2023 - Python
Methylation/modified base calling separated from basecalling.
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Sep 17, 2024 - Python
Research release basecalling models and configurations
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Jun 18, 2024 - Python
modPhred is a pipeline for detection of DNA/RNA modifications from raw ONT data
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Apr 29, 2024 - Python
Nanopore direct RNA basecaller
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Oct 27, 2022 - Python
snakemake workflow for basecalling and demultiplexing of ONT sequencing data
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Apr 4, 2023 - Python
Quickstart to Bioinformatics & Biomedical AI.
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Sep 25, 2024 - Python
Novel basecaller, jointly processing raw and event data from ONT nanopore, basec on encoder-decoder + attention architecture
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Jun 19, 2022 - Python
Benchmarking several NVIDIA GPUs with dorado
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Feb 1, 2024 - Python
nanoRMS2 is a pipeline for detection of DNA/RNA modifications from raw ONT data
machine-learning nanopore dna semi-supervised-learning rna features stoichiometry fast5 modifications basecalling
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Feb 5, 2025 - Python
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