URL for the publication to be provided when available
| File | Description | Credit |
|---|---|---|
ucsc-msa |
Mammalian gene alignments based on UCSD data. NEXUS alignments (one per gene). Offical gene names if available. .gz compressed |
[Partha et al] (https://elifesciences.org/articles/25884) |
ucsc.nwk |
The reference species tree with branch lengths for UCSC data | Nathan Clark |
species-lists |
Line lists of species with a particular phenotype | Maria Chikina |
simulations |
Simulated sequence data. 100 replicates per setting. Each directory is named as follows: labeling_stategy/LENGTH_N_RATE_R.tar.gz, where N is the alignment length and R is the relative rate on test vs background (=1) |
N/A |
simulation.nwk |
The reference tree used for sequence simulations | [Osipova et al] (https://www.biorxiv.org/content/10.1101/2024.08.30.610474v1) |
processor.py |
A Python script to generate a CSV file from a directory of MoleRate results | N/A |
results |
MoleRate results for the three phenotypes (+random) analyzed in the paper; each directory contains .gzipped JSON files |
N/A |
summaries |
.csv summaries by phenotype (generated by processor.py) |
N/A |