Skip to content
@waldronlab

Waldron Lab at the CUNY SPH

Software and educational materials from the Waldron lab for computational biostatistics at the CUNY SPH in New York City

Pinned Loading

  1. MultiAssayExperiment MultiAssayExperiment Public

    Bioconductor package for management of multi-assay data

    R 71 34

  2. curatedMetagenomicData curatedMetagenomicData Public

    Curated Metagenomic Data of the Human Microbiome

    R 129 30

  3. curatedTCGAData curatedTCGAData Public

    Curated Data From The Cancer Genome Atlas (TCGA) as MultiAssayExperiment Objects

    R 44 8

  4. cBioPortalData cBioPortalData Public

    Integrate the cancer genomics portal, cBioPortal, using MultiAssayExperiment

    R 33 13

  5. presentations presentations Public

    A repository for public presentations

    TeX 6 10

  6. BugSigDB BugSigDB Public

    A microbial signatures database

    JavaScript 8 7

Repositories

Showing 10 of 106 repositories
  • BugSigDBExports Public

    BugSigDB data files

    waldronlab/BugSigDBExports’s past year of commit activity
    R 1 3 7 0 Updated Mar 5, 2025
  • BugSigDBcuration Public

    For documenting issues related to BugSigDB curation.

    waldronlab/BugSigDBcuration’s past year of commit activity
    11 8 79 0 Updated Mar 4, 2025
  • curatedMetagenomicDataCuration Public

    Sample Metadata Curation for curatedMetagenomicData

    waldronlab/curatedMetagenomicDataCuration’s past year of commit activity
    R 29 23 16 (1 issue needs help) 1 Updated Mar 3, 2025
  • bugsigdbr Public

    R-side access to published microbial signatures from BugSigDB

    waldronlab/bugsigdbr’s past year of commit activity
    R 3 GPL-3.0 3 5 1 Updated Mar 3, 2025
  • BugSigDB Public

    A microbial signatures database

    waldronlab/BugSigDB’s past year of commit activity
    JavaScript 8 7 18 0 Updated Feb 27, 2025
  • BugSigDBStats Public

    BugSigDB Stats and Analysis

    waldronlab/BugSigDBStats’s past year of commit activity
    HTML 1 4 4 0 Updated Feb 20, 2025
  • lefser Public

    R implementation of the LEfSe method

    waldronlab/lefser’s past year of commit activity
    R 56 5 8 1 Updated Feb 18, 2025
  • curatedMetagenomicData Public

    Curated Metagenomic Data of the Human Microbiome

    waldronlab/curatedMetagenomicData’s past year of commit activity
    R 129 Artistic-2.0 30 14 0 Updated Feb 18, 2025
  • cBioPortalData Public

    Integrate the cancer genomics portal, cBioPortal, using MultiAssayExperiment

    waldronlab/cBioPortalData’s past year of commit activity
    R 33 13 5 0 Updated Feb 11, 2025
  • utils Public

    Misc. scripts for assorted tasks

    waldronlab/utils’s past year of commit activity
    Shell 1 0 0 0 Updated Feb 11, 2025
View all repositories

Top languages

Loading…

Most used topics

Loading…