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@wtsi-npg

Wellcome Sanger Institute - NPG

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  1. illumina2bam illumina2bam Public

    Generate and process BAM files from Illumina sequencing instrument files

    Java 23 15

  2. baton baton Public

    iRODS client programs and API

    C 19 19

  3. npg_seq_pipeline npg_seq_pipeline Public

    Processing and analysis of data coming from Illumina sequencing machines

    Perl 9 17

  4. bambi bambi Public

    Process Illumina instrument data into SAM/BAM/CRAM files.

    C 9 14

  5. Percolate Percolate Public archive

    A parallel workflow management application.

    Ruby 6 3

  6. genotyping genotyping Public

    Components of the WTSI genotype analysis pipeline.

    Perl 5 6

Repositories

Showing 10 of 82 repositories
  • npg_porch_cli Public

    A command-line client to enable communication with the npg_porch API.

    wtsi-npg/npg_porch_cli’s past year of commit activity
    Python 0 4 1 0 Updated Mar 7, 2025
  • npg_porch Public
    wtsi-npg/npg_porch’s past year of commit activity
    Python 2 GPL-3.0 4 11 0 Updated Mar 7, 2025
  • npg-irods-python Public

    Applications for the management of data and metadata in iRODS

    wtsi-npg/npg-irods-python’s past year of commit activity
    Python 1 GPL-3.0 8 1 1 Updated Mar 7, 2025
  • containers Public

    Singularity and Docker material

    wtsi-npg/containers’s past year of commit activity
    Dockerfile 1 6 7 0 Updated Mar 7, 2025
  • partisan Public

    A Python client API for iRODS

    wtsi-npg/partisan’s past year of commit activity
    Python 1 GPL-3.0 4 0 1 Updated Mar 6, 2025
  • extendo Public

    An extension to baton providing a Go API for iRODS (Integrated Rule-Oriented Data System)

    wtsi-npg/extendo’s past year of commit activity
    Go 0 GPL-3.0 2 0 1 Updated Mar 5, 2025
  • npg_seq_melt Public

    Operations on processed sequencing data (merges, metadata updates for the archive, etc.)

    wtsi-npg/npg_seq_melt’s past year of commit activity
    Perl 0 8 5 0 Updated Mar 5, 2025
  • p4 Public

    Process and Pipe Pipeline Panacea

    wtsi-npg/p4’s past year of commit activity
    Perl 3 14 8 8 Updated Mar 5, 2025
  • ml_warehouse Public

    Perl DBIx binding to a warehouse housing data from multiple LIM systems

    wtsi-npg/ml_warehouse’s past year of commit activity
    Perl 3 14 1 0 Updated Mar 4, 2025
  • samtools_container Public

    Scripts to create a docker container for samtools

    wtsi-npg/samtools_container’s past year of commit activity
    Shell 1 7 3 1 Updated Mar 3, 2025
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