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Implemented the Noah-MP Land Surface Model #1161
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I think we may have discussed what to do about this before (apologies for my poor memory!), but we get a compilation error with recent GNU compilers:
Should we try to fix this locally (since we have a copy of the Noah-MP code) and separately feed a fix upstream to the Noah-MP repository? |
The Noah-MP LSM sourcecode is copied from the Noah-MP github repository and corresponds to release-v5.0.1 (at hash 12a0b51aa52f6f5189525009ff249dfcbc95d29a), i.e.: commit 12a0b51aa52f6f5189525009ff249dfcbc95d29a Merge: 9fd80cb 843a742 Author: Cenlin_He <cenlinhe@ucar.edu> Date: Thu Jan 4 20:21:19 2024 -0700 Merge pull request MPAS-Dev#108 from NCAR/develop
…physics_noahmp, modified sourcecode to compile the original Noah-MP sourcecode inside the MPAS framework: -> in ./physics_noahmp/utility, modified Machine.F90 to become dependent to mpas_kind_types.F. -> in ./physics_noahmp/utility, ./physics_noahmp/src, and ./physics_noahmp/drivers/hrldas, modified Makefile to compile Noah-MP inside the MPAS framework. -> in src/core_atmosphere/physics/physics_noahmp/drivers/hrldas/NoahmpDriverMainMod.F90, removed the WRF modules module_ra_gfdleta and module_data_gocart_dust. -> modified Makefile to compile all physics_noahmp subdirectories.
…p/parameters/NoahmpTable.TBL as we do for all the files in ./physics/physics_wrf. NoahmpTable.TBL is need to run the Noah-MP land surface scheme.
-> in /physics_noahmp/drivers, renamed the directory hrldas to mpas. -> in Makefile, changed all instance of hrldas to mpas.
…ed all instances of the J dimension and all references to WRF-related dimensions.
… NoahmpIOVarFinalizeMod.F90 to deallocate all arrays first allocated in NoahmpIOVarInitMod.F90. Modified Makefile accordingly.
…ic variables soilcomp, soilcl1, soilcl2, soilcl3, and soilcl4 needed to run the Noah-MP land surface scheme.
…he Noah-MP land surface scheme: -> added the Noah-MP Registry file ./physics/Registry_noahmp.xml to Registry.xml. That file includes all the extra arrays to run Noah-MP. -> in ./physics/mpas_atmphys_control.F, added the option sf_noahmp as an alternate to sf_noah. -> in ./physics/mpas_atmphys_manager.F, added the outputs month and day as outputs to mpas_get_time. month and day are needed in ./physics_noahmp. -> in ./physics/mpas_atmphys_packages, added the package sf_noahmp_in.
…DriverMainMod.F90, added print statements for NoahmpIO%itimestep and NoahmpIO%xice_threshold.
…InitMainMod.F90, remove the initialization of NoahmpIO%areaxy.
…IOVarFinalizeMod.F90, removed the sourcecode that initializes NoahmpIO variables since NoahmpIOVarFinalizeMod.F90 is only called to deallocate variables at the end of forecasts.
-> in Registry.xml, added Noahmp variables to the input and restart streams to run the Noah-MP land surface scheme. -> added ./physics/Registry_noahmp.xml which contains all the Noah-MP variables needed to run the Noah-MP land surface scheme.
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I modified RunoffSurfaceDynamicVicMod.F90 so that the file can be compiled with gcc/12.2.0. I am not entirely sure if the modified file breaks the logic of the sourcecode or not. |
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Right now, we get quite a lot of output from Noah-MP-related code in every timestep:
--- enter subroutine driver_lsm_noahmp:
--- enter subroutine lsm_noahmp_fromMPAS: itimestep = 46
--- enter subroutine lsm_noahmp_sounding_fromMPAS: 1
--- end subroutine lsm_noahmp_sounding_fromMPAS:
--- end subroutine lsm_noahmp_fromMPAS.
--- enter subroutine NoahmpDriverMain:
--- enter subroutine noahmpdrivermain:
--- NoahmpIO%itimestep = 46
--- NoahmpIO%soiltstep = 0.00000
--- NoahmpIO%dtbl = 360.000
--- NoahmpIO%soil_update_steps = 1
--- NoahmpIO%calculate_soil = T
--- NoahmpIO%isurban_table = 13
--- NoahmpIO%urbtype_beg = 50
--- NoahmpIO%sf_urban_physics = 0
--- NoahmpIO%iri_urban = 0
--- NoahmpIO%yearlen = 365
--- NoahmpIO%yr = 2010
--- NoahmpIO%month = 10
--- NoahmpIO%day = 23
--- NoahmpIO%julian = 295.188
--- NoahmpIO%xice_threshold = 0.200000E-01
--- enter subroutine lsm_noahmp_toMPAS:
--- end subroutine lsm_noahmp_toMPAS:
--- end subroutine driver_lsm_noahmp:
Most of this looks like it might have been used during development but could be removed now; what do you think?
modified sourcecode accordingly. |
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I rewinded the sourcecode to get back to the original sourcecode for RunoffSurfaceDynamicVicMod.F90. Also removed print statements that are printed to the logfiles during the initialization of Noah-MP. As we talked about, Michael will modify the flags used to compile Noah-MP so that we can run MPAS-Model with the latest versions of the gnu compiler with optimization. |
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I've just left a couple of additional small requests.
Otherwise, I'm working on some changes to deal with compilation failures with the GNU compilers.
-> added mpas_atmphys_lsm_noahmpinit.F to initialize Noah-MP variables within the MPAS framework. -> added mpas_atmphys_driver_lsm_noahmp.F to run the Noah-MP land surface scheme within the MPAS framework.
-> in mpas_atmphys_vars.F, added the structure mpas_noahmp of type NoahmIO_type that contains all the Noah-MP variables and arrays needed for Noah-MP to communicate with the MPAS physics. -> in mpas_atmphys_init.F, added call to init_lsm_noahmp to initialize Noah-MP. -> in mpas_atmphys_driver.F, added call to driver_lsm_noahmp to run Noah-MP. -> Modified Makefile accordingly. -> in ./../mpas_atm_core.F, modified call to physics_init to include the pools diag_physics_noahmp and output_noahmp.
…ument missing_value to the definition of Noah-MP variables. missing_value is set to -9999 for integer and -9999.0 to real variables, as defined in Machine.F90 used in Noah-MP.
…oved variables needed in the crop model. The crop model is currently not available and related variables are not used.
…removed variables needed in the ground water parameterization.The ground water model is currently not available and related variables are not used.
-> in NoahmpInitMod.F90, removed the initialization of xland, xice, and xice_threshold, and move all three variables to ./physics. -> in NoahmpDriverMainMod.F90, rearranged print statements.
…added the initialization of xland to subroutine lsm_noahmp_fromMPAS.
… description of a few Noah-MP variables.
…ded to run the Noah-MP land surface scheme.
-> moved the variables soilcomp, soilcl1, soilcl2, and soilcl3 from the input stream to the invariant stream. -> added the variable soilcl4 to the input stream.
-> in ./physics_noahmp/drivers/mpas/NoahmpDriverMainMod.F90, commented extra print statements. -> in mpas_atmphys_driver_lsm_noahmp.F, commented extra print statements.
…ed to run Noah-MP from the restart stream since they are available in the "invariant" stream and the invariant stream is included in the "restart" stream.
…mented extra print statements originally written during the initialization of Noah-MP.
…oved extra print statements before and after call to subroutine NoahmpInitMain.
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Although the model won't compile with the gnu
build target at present, this can be addressed by a future PR.
Thanks for your help. |
This PR adds the implementation of the Noah-MP land surface model (LSM):
The sourcecode of the Noah-MP LSM was downloaded from the Noah-MP github repository and corresponds to the release-v5.0.1. It is located in the directory ./src/core_atmosphere/physics/physics_noahmp.
./src/core_atmosphere/physics/Registry_noahmp.xml contains all the run options and variables needed to link the Noah-MP sourcecode to the MPAS physics framework.
./src/core_atmosphere/physics/mpas_atmphys_lsm_noahmpinit.F includes the initialization of the Noah-MP LSM.
./src/core_atmosphere/physics/mpas_atmphys_driver_lsm_noahmp.F is the main driver for the Noah-MP LSM.