feat: hackathon/kg model hack Jack Saleh Sandeep (Team Galway)

[SandeepRed]

For authors

Description

1. Get species descriptions(get_descriptions_fromPdf.py) and save JSON file**(descriptions_output.json)** to and identify GO terms related to the article(extract_relevant_GOTerms.py).
   Ideally would embed the whole text from article and vector search for GO nodes
2. Retrieve associated gene/protein nodes by linking them to the selected GO terms from PrimeKG and embed (embed_genes.py).
3. Perform semantic search using FAISS on OpenAI embeddings to find the most relevant Entrez Gene IDs based on query descriptions**(embed_descriptions_search_ncbi.py)**
   Final output: species_gene_matches.csv